View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3686_low_41 (Length: 216)
Name: NF3686_low_41
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 38166949 - 38166758
Alignment:
| Q |
9 |
aggagcagagactacaggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcacaacataggagaaatctcattctgt |
108 |
Q |
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| T |
38166949 |
aggagcagtgactacaggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcacaacataggagaaatctcattctgt |
38166850 |
T |
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| Q |
109 |
tgtgtttgtgtctgttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgttcaacagcgacagtaac |
200 |
Q |
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| T |
38166849 |
tgtgtttgtgtctgttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgttcaacagcgacagtaac |
38166758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 38172931 - 38173122
Alignment:
| Q |
9 |
aggagcagagactacaggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcacaacataggagaaatctcattctgt |
108 |
Q |
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| T |
38172931 |
aggagcagtgactacaggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcacaacataggagaaatctcattctgt |
38173030 |
T |
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| Q |
109 |
tgtgtttgtgtctgttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgttcaacagcgacagtaac |
200 |
Q |
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| T |
38173031 |
tgtgtttgtgtctgttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgttcaacagcgacagtaac |
38173122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 38200155 - 38200346
Alignment:
| Q |
9 |
aggagcagagactacaggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcacaacataggagaaatctcattctgt |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38200155 |
aggagcagtgactacaggagtaagctcattttgttgctgaaccgaaggaattgtagaactgattggcagcaagcacaacataggagaaatctcattctgt |
38200254 |
T |
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| Q |
109 |
tgtgtttgtgtctgttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgttcaacagcgacagtaac |
200 |
Q |
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| T |
38200255 |
tgtgtttgtgtctgttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcatctcgctgttcaacagcgacagtaac |
38200346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 11491603 - 11491489
Alignment:
| Q |
76 |
agcaagcacaacataggagaaatctcattctgttgtgtttgtgtctgttgcattccttgaggaggaatcacactttgtagctcaactgaaggaatctcat |
175 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||| |||| |||||||||||||||| |
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| T |
11491603 |
agcaagcacaacataggagaaatctcattttgttgtgtttgtgtctgttgcattccttgaggaggagtctcactttgttgctcgactgaaggaatctcat |
11491504 |
T |
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| Q |
176 |
ctcgctgttcaacagcga |
193 |
Q |
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| T |
11491503 |
ct---tgttcaacagcga |
11491489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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