View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3686_low_42 (Length: 205)
Name: NF3686_low_42
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 41876042 - 41876212
Alignment:
| Q |
17 |
aatatgttatagggaactgtgacttgcttttgctaagcattgctctttgacatgtttagttgatcttgcagtggccaaggtaccatatccttggagcttt |
116 |
Q |
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| T |
41876042 |
aatatgttatagggaactgtgacttgcttttgctaagcattgctctttgacatgtttagttgatcttgcagtggccaaggtaccatatccttggagcttt |
41876141 |
T |
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| Q |
117 |
tggaacaagcccctcagattgatactcttgtagtacctataagtggtttgttcttatttttatgttaatcc |
187 |
Q |
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| T |
41876142 |
tggaacaagcccctcagattgatactcttgtagtacctataagtggtttgttctcatttttatgttaatcc |
41876212 |
T |
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Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 57 - 168
Target Start/End: Complemental strand, 40867984 - 40867873
Alignment:
| Q |
57 |
tgctctttgacatgtttagttgatcttgcagtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtacctat |
156 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| | ||||| ||||| ||||| || |
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| T |
40867984 |
tgctctttgacatgtttgtttgatcttgcagtggccagggtaccatatccttggagcttctggaacaagcccctcaactagatacacttgtggtaccaat |
40867885 |
T |
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| Q |
157 |
aagtggtttgtt |
168 |
Q |
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| T |
40867884 |
aagtggtttgtt |
40867873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 24800695 - 24800578
Alignment:
| Q |
56 |
ttgctctttgacatgttta---gttgatcttgcagtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtac |
152 |
Q |
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| T |
24800695 |
ttgctctttgacatgtttgctggttgatcttatagtggccaaggtaccatatccttggagtttcttgaacaaatccctcaaatcgatacacttgtagtac |
24800596 |
T |
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| Q |
153 |
ctataagtggtttgttct |
170 |
Q |
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| T |
24800595 |
caataagtggtttgttct |
24800578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 24817771 - 24817654
Alignment:
| Q |
56 |
ttgctctttgacatgttta---gttgatcttgcagtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtac |
152 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || | |||||| |||||| || ||||| |||||||||| |
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| T |
24817771 |
ttgctctttgacatgtttgctggttgatcttatagtggccaaggtaccatatccttggagtttcttgaacaaatccctcaaatcgatacacttgtagtac |
24817672 |
T |
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| Q |
153 |
ctataagtggtttgttct |
170 |
Q |
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| T |
24817671 |
caataagtggtttgttct |
24817654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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