View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3686_low_6 (Length: 577)
Name: NF3686_low_6
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 17 - 567
Target Start/End: Complemental strand, 37163610 - 37163060
Alignment:
| Q |
17 |
cactagacacatgcaagcaattaatggatctttctattggcgaatttgataggtcaatagagggaatnnnnnnntttgatctcaataatttagaaaacat |
116 |
Q |
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| T |
37163610 |
cactagacacatgcaagcaattaatggatctttctattggcgaattcgataggtcaatagagggaataaaaaattttgatctcaataatttagaaaacat |
37163511 |
T |
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| Q |
117 |
tcttgtgaatttaaaggtttggttaagtggtgcaattacataccaagaaacttgtttagatggttttgagaatactactagtgatgctagcaagaaaatg |
216 |
Q |
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| T |
37163510 |
tcttgtgaatttaaaggtttggttaagtggtgcaattacataccaagaaacttgtttagatggttttgagaatactactagtgatgctagcaagaaaatg |
37163411 |
T |
|
| Q |
217 |
aagaatattttaacaacttcaatgcatatgagtagcaatgcacttgctgtcatttcagatttggcagataatgttttggatttgaacgcgacaacagatg |
316 |
Q |
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| T |
37163410 |
aagaatattttaacaacttcaatgcatatgagtagcaatgcacttgctgtcatttcagatttggcagataatgttttggatttgaacgcgacaacagatg |
37163311 |
T |
|
| Q |
317 |
gacgtcgacttattgatgattataagggcgagtatgtgggtgaacaagttgttgctaaagatgatgttaatgatgttccttcttgggttggtgatggttt |
416 |
Q |
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| T |
37163310 |
gacgtcgtcttattgatgattataagggcgagtatgtgggtgaacaagttgttgctaaagatgatgttaatgatgttccttcttgggttggtgatggttt |
37163211 |
T |
|
| Q |
417 |
aagtgttggtgttcgaagacttcttcatgtaaatcaacataaactcaaggctaatgtggttgtggctaaagatggtagtggaaagttcaagaaaatcaat |
516 |
Q |
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| T |
37163210 |
aagtgttggtgttcgaagacttcttcatgtaaatcaacataaactcaaggctaatgtggttgtggctaaagatggtagtggaaagtttaagaaaatcaat |
37163111 |
T |
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| Q |
517 |
gatgctttgaaacaggttccaaagaagaaccaaaaaccttttgttattcat |
567 |
Q |
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| T |
37163110 |
gatgctttgaaacaggttccaaagaagaaccaaaaaccttttgttattcat |
37163060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 136 - 256
Target Start/End: Original strand, 46314705 - 46314825
Alignment:
| Q |
136 |
tggttaagtggtgcaattacataccaagaaacttgtttagatggttttgagaatactactagtgatgctagcaagaaaatgaagaatattttaacaactt |
235 |
Q |
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|||||||| ||||| || |||||||||||||| ||||| |||| ||||||||||||||| | |||||| | || |||||||| | |||| ||||| |
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| T |
46314705 |
tggttaagcggtgccatcacataccaagaaacatgtttggatgcttttgagaatactacaaccgatgctggtaaaaaaatgaaagaggttttgcaaactt |
46314804 |
T |
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| Q |
236 |
caatgcatatgagtagcaatg |
256 |
Q |
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| T |
46314805 |
ctatgcatatgagtagcaatg |
46314825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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