View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3686_low_7 (Length: 467)
Name: NF3686_low_7
Description: NF3686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3686_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 1104083 - 1103628
Alignment:
| Q |
1 |
aatctcaactgatccttttttcaatacaatttctggattactacgaaggacaatagcccaagtaaaatctcccgaagacggatcatcccaatttttccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1104083 |
aatctcaactgatccttttttcaatacaatttctggattactacgaaggacaatagcccaagtaaaatctcccgaagacggatcatcccaatttttccat |
1103984 |
T |
|
| Q |
101 |
gaagttaattgacgattaagaccggtttttaggtcccatccaagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1103983 |
gaagttaattgacgattaagaccggtttttaggtcccatccaagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaat |
1103884 |
T |
|
| Q |
201 |
tattactttgttgatcagtattgttgttggctttgattacaaagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1103883 |
tattactttgttgatcagtattgttgttggctttgattacaaagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgt |
1103784 |
T |
|
| Q |
301 |
tgtgatgtttgttgaccaaacaagagtttgattgttgttggtaagtagttcaagatttccatcattgctcatgatcaacatggttgagttggaggtgttg |
400 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1103783 |
tgtgatgtttgttgaccaaacaagtgtttgattgttgttggtaagtatttcaaggtttccatcattgctcatgatcaacatggttgagttggaggtgttg |
1103684 |
T |
|
| Q |
401 |
tctttgattggttcatcacggtttgcaacccaaactattcttctttttgggatatt |
456 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1103683 |
tctttgattggattatcacggtttgcaacccaaactattcttctttttgggatatt |
1103628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 1087527 - 1087087
Alignment:
| Q |
1 |
aatctcaactgatccttttttcaatacaatttctggattactacgaaggacaatagcccaagtaaaatctcccgaagacggatcatcccaatttttccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
1087527 |
aatctcaactgatccttttttcaatacaacttctggattactactaaggacaataccccaagttaaatctcccgaagatggatcgtcccaacttttccat |
1087428 |
T |
|
| Q |
101 |
gaagttaattgacgattaagaccggtttttaggtcccatccaagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1087427 |
gaagttaattgacgattaagaccggtttttaggtcccatccaagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaat |
1087328 |
T |
|
| Q |
201 |
tattactttgttgatcagtattgttgttggctttgattacaaagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1087327 |
tattactttgttgatcagtattgttgttggctttgattacaaagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgt |
1087228 |
T |
|
| Q |
301 |
tgtgatgtttgttgaccaaacaagagtttgattgttgttggtaagtagttcaagatttccatcattgctcatgatcaacatggttgagttggaggtgttg |
400 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1087227 |
tgtgatgtttgttgaccaaacaagtgtttgattgttgttggtaagtatttcaaggtttccatcattgctcatgatcaacatggttgagttggaggtgttg |
1087128 |
T |
|
| Q |
401 |
tctttgattggttcatcacggtttgcaacccaaactattct |
441 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1087127 |
tctttgattggatcatcacggtttgcaacccaaactattct |
1087087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 5 - 456
Target Start/End: Complemental strand, 1071862 - 1071411
Alignment:
| Q |
5 |
tcaactgatccttttttcaatacaatttctggattactacgaaggacaatagcccaagtaaaatctcccgaagacggatcatcccaatttttccaagaag |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || ||||||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
1071862 |
tcaactgatccttttttcaatacaatttctggattactatgaaggacaataccccatgttaaatctcccgatgatggatcgtcccaatttttccaagaag |
1071763 |
T |
|
| Q |
105 |
ttaattgacgattaagaccggtttttaggtcccatccaagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaattatt |
204 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1071762 |
ttaattgacgattaagaccggtttttaagtcccatccatgcttcatgcctgccaacaaagtatcacaaggaaaatcaaaaccttgccataagaaattatt |
1071663 |
T |
|
| Q |
205 |
actttgttgatcagtattgttgttggctttgattacaaagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1071662 |
actttgttgatcagtattgttgttggctttgattacaaagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtg |
1071563 |
T |
|
| Q |
305 |
atgtttgttgaccaaacaagagtttgattgttgttggtaagtagttcaagatttccatcattgctcatgatcaacatggttgagttggaggtgttgtctt |
404 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
1071562 |
atgtttgttgaccaaacaagtgtttgattgttgttggtaagtagttcaaggtttccctctttgctcatgatcaacatggttgagttggagttgttgtcct |
1071463 |
T |
|
| Q |
405 |
tgattggttcatcacggtttgcaacccaaactattcttctttttgggatatt |
456 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1071462 |
tgattggatcatcacggtttgcaacccaaactattcttctttttgggatatt |
1071411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 5 - 453
Target Start/End: Complemental strand, 1047049 - 1046601
Alignment:
| Q |
5 |
tcaactgatccttttttcaatacaatttctggattactacgaaggacaatagcccaagtaaaatctcccgaagacggatcatcccaatttttccaagaag |
104 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
1047049 |
tcaactgatcctcttttcaaaacaatttctggattactacgaaggacaataccccaagttaaatctcccgaagatggatcgtcccaatttttccaagaag |
1046950 |
T |
|
| Q |
105 |
ttaattgacgattaagaccggtttttaggtcccatccaagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaattatt |
204 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1046949 |
ttaatggacgattaagaccaatttttaggtcccatccaagcttcatgtctggcaacaaagtatcacaaggaaaatcaaaaccttgccataagaaattatt |
1046850 |
T |
|
| Q |
205 |
actttgttgatcagtattgttgttggctttgattacaaagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagattgtgttgtg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
1046849 |
actttgttgatcagtattgttgttggctttgattacaaagtttccattgtctaatagttgagcaacatgagaacttgtagttgacaaagatcgggttgtg |
1046750 |
T |
|
| Q |
305 |
atgtttgttgaccaaacaagagtttgattgttgttggtaagtagttcaagatttccatcattgctcatgatcaacatggttgagttggaggtgttgtctt |
404 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| ||||||| | || ||||| || ||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
1046749 |
atgtttgttgaccaaacaagtgtttggttgttgttggaaagtagtactaggtttccttcgttgcttatgatcaacatggttgagttggaattgttgtctt |
1046650 |
T |
|
| Q |
405 |
tgattggttcatcacggtttgcaacccaaactattcttctttttgggat |
453 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1046649 |
tgattggattatcacggtttgcaacccaaactattcttctttttgggat |
1046601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University