View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_high_10 (Length: 440)
Name: NF3687_high_10
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 5 - 427
Target Start/End: Original strand, 5848501 - 5848923
Alignment:
| Q |
5 |
caagttggactcggacatcattgttgatagtgtcaagatctgattaaacgaaaccaatcattaacactgtcaatgcaggtaggacatgtccaaaaaaggt |
104 |
Q |
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| T |
5848501 |
caagttggactcggacatcattgttgatagtgtcaagatctgattaaacgaaaccaatcattaacaatgtcaatgcaggtaggacatgtccggaaaaggt |
5848600 |
T |
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| Q |
105 |
tcaactatacaataccttcgaggcgtagttttgccggaagggtttggtatagtctttgagatggctggaaatggtagtaattttgtgcggaaatgtaatc |
204 |
Q |
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| T |
5848601 |
tcaactatacaataccttcgaggcgtagttttgccggaagggtttggtatagtctttgagatggctggaaatgggagtaattttgtgcggaaatgtaatc |
5848700 |
T |
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| Q |
205 |
accattcaccctccttgattacttttcttcatcctctcctatcaagaaacattggaaatcgctaactctaatttgacatgcatgcaacggtttgaaaatt |
304 |
Q |
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| T |
5848701 |
accattcaccctccttgattacttttcttcatcctctcctatcaagaaacattggaaatcgctaactctgatttgacatgcatgcaacagtttgaaaaat |
5848800 |
T |
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| Q |
305 |
ttggaaagctagaaaactttcttataatttttctaattttcggcattttcacaaatagaccaatctttaaaatattccattttatttataactttgaaca |
404 |
Q |
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| T |
5848801 |
ttggaaagctagaaaactttcttaaaatttttctaattttcggcattttcactaatagaccaatctttaaaatattccattttatttataactttgaaca |
5848900 |
T |
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| Q |
405 |
ttttcgttccatcaccaatattc |
427 |
Q |
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| T |
5848901 |
ttttcgttccatcaccaatattc |
5848923 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 12332453 - 12332518
Alignment:
| Q |
212 |
accctccttgattacttttcttcatcctctcctatcaagaaacattggaaatcgctaactctaatt |
277 |
Q |
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| T |
12332453 |
accctccttgactacttctcttcctcttctctaagcaagaaacattggaaacggctaactctaatt |
12332518 |
T |
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