View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_high_12 (Length: 429)
Name: NF3687_high_12
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Complemental strand, 51215810 - 51215409
Alignment:
| Q |
19 |
agaatcaggtggatgtttggttgaagaggtattgagcttcttattgagagatgaattagaatcagtaatctttggtttagagggaacattttggggattt |
118 |
Q |
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| T |
51215810 |
agaatcaggtggatgtttggttgaagaggtattgagcttcttattgagagatgaattagaatcagtaatctttggtttagagggaacattttggggattt |
51215711 |
T |
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| Q |
119 |
ggcttgatcttaaccatagtgcttttggtctcagccatgttattcaatcaaccaaatttaactttgttaatttcatcaacaatggatttgatatttgttt |
218 |
Q |
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| T |
51215710 |
ggcttgatcttaaccatagtgcttttggtctcagccatgttattcaatcaaccaaatttaactttgttaatttcatcaacaatggatttgatatttgttt |
51215611 |
T |
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| Q |
219 |
tgtgatgatatttaaagagaaaaagaattctgggattttaagattgcaggattgagaagaaaagataacacagatcttaaggtggggaccacagaaacag |
318 |
Q |
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| T |
51215610 |
tgtcatgatatttaaagagaaaaagaattct-ggattttaagattgcaggattgagaagaaaagataacacagatcttaaggtggggaccacagaaacag |
51215512 |
T |
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| Q |
319 |
acattgttttcagtttttcactgattttcacgttaattaacggtggtcggaacacacgtgtaactgcgtgttagttaaaactttaaacatttactccttt |
418 |
Q |
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| T |
51215511 |
acattgttttcagtttttcactgattttcacgttaattaacggtggtcggaacacacgtgtaactgcgtgttagttaaaactttaaacatttactcctct |
51215412 |
T |
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| Q |
419 |
gct |
421 |
Q |
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| T |
51215411 |
gct |
51215409 |
T |
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