View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_high_19 (Length: 397)
Name: NF3687_high_19
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 153 - 387
Target Start/End: Complemental strand, 32772354 - 32772120
Alignment:
| Q |
153 |
cttttccatcaccatcttgataagccaccaaccatcttgcaaatgcagctccacatgaaccttctctactatgttcaccactagatcttactcctcttct |
252 |
Q |
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| T |
32772354 |
cttttccatcaccatcttgataagccaccaaccatcttgcaaatgcagctccacatgaaccttctctactatgttcaccactagatcttactcctcttct |
32772255 |
T |
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| Q |
253 |
tccttctaagctacccttttcctctttgtctctttcatttgacatacaagaagacctacaaggaaaaaagcaactaaactctctcaaagcttcacaaatt |
352 |
Q |
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| T |
32772254 |
tccttctaagctacccttttcctctttgtctctttcatttgacatacaagaagacctacaaggaaaaaagcaactaaactctctcaaagcttcacatatt |
32772155 |
T |
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| Q |
353 |
gtcaaaggcaaatgaacccatctttgattcctatg |
387 |
Q |
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| T |
32772154 |
gtcaaaggcaaatgaacccatctttgattcctatg |
32772120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 32772490 - 32772452
Alignment:
| Q |
17 |
atatcaagatcttcaaaaatatgtctcctttgactataa |
55 |
Q |
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| T |
32772490 |
atatcaagatcttcaaaaatatgtctcctttgactataa |
32772452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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