View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_high_20 (Length: 391)
Name: NF3687_high_20
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 375
Target Start/End: Original strand, 21599764 - 21600128
Alignment:
| Q |
9 |
gatatgaattattttattgcttcggtatgtttacannnnnnngtctaatagattgaaaaatttgatatatacacacacacattccagctcttattttaat |
108 |
Q |
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| T |
21599764 |
gatatgaattattttattacttcggtatgtttacatttttttgtctaatagattgaaaaatttgatat--acacacacacattccagctcttattttaat |
21599861 |
T |
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| Q |
109 |
cttttattgtgtagcgttactaagatgttttttggttgtttatgcgaggtaaaatcccgagggatgaattacttcatgatcttgagatcaaaaggacagt |
208 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21599862 |
cttttattgtgtagcgttactaagatgtcttttggttgtttatgcgaggtaaaatcccgagggatgaattacttcatgatcttgagatcaaaaggacagt |
21599961 |
T |
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| Q |
209 |
aagagctaaccagaaggcaatttgtttggctcagttagaagaagatacacttaaagaagcacaaaccaatccgaatcaaattttgattgaagtaccaaag |
308 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21599962 |
aagagctaactagaaggcaatttgtttggctcaattagaagaagatacacttaaggaagcacaaaccaatccgaatcaaattttgattgaagtaccagag |
21600061 |
T |
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| Q |
309 |
attggtgataatcctctggtaccacctccaaggtctgtcatggacaattgagttgggatttggataa |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21600062 |
attggtgataatcctctggtaccacctccaaggtctgtcatggacaattgagttgggatttggataa |
21600128 |
T |
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