View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_high_21 (Length: 381)
Name: NF3687_high_21
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 364
Target Start/End: Complemental strand, 27560275 - 27559919
Alignment:
| Q |
11 |
cataggataacaaaacagaacgttggcttgacaatattaacaatatatttgtctggtcaaagcaatttagcataccaacaaaaaactccaaatttgagtt |
110 |
Q |
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| T |
27560275 |
cataggataacaaaacagaacgttggcttgacaatattaacaatatatttgtctggtcaaagcaatttagcataccaataaaaaactccaaatttgagtt |
27560176 |
T |
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| Q |
111 |
atgaagtctatatgagactcggttattaatttgctgtgtacacaaaattttaaacttttcttgctttgattacataactgatggacttcttgcactactt |
210 |
Q |
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| T |
27560175 |
atgaagtctatatgagactcagttattaattagctgtgtacacaacattttaaacttttcatgctttgattacataactgatggacttcttgcactactt |
27560076 |
T |
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| Q |
211 |
atgttactgggaggaagtgactgatttcacataacta---caaagcagtggattttttctttctttctggattattgattaatcaagttgttggcacaac |
307 |
Q |
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| T |
27560075 |
atgttactgggaggaagtgactgatttcacataactacttcaaagcagtggattttttctttctttctggattattgattaatcaagttgttggcacaac |
27559976 |
T |
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| Q |
308 |
actcggaccaccatgtctgccaatttccaagtaacagtaacaccagatagtatattg |
364 |
Q |
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| T |
27559975 |
actcggaccaccatgtctgccaatttccaagtaacagtaacaccagatagtatattg |
27559919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 27586793 - 27586828
Alignment:
| Q |
314 |
accaccatgtctgccaatttccaagtaacagtaaca |
349 |
Q |
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| T |
27586793 |
accaccatgtctgccaatttccaagtaacaataaca |
27586828 |
T |
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