View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3687_high_24 (Length: 365)

Name: NF3687_high_24
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3687_high_24
NF3687_high_24
[»] chr4 (8 HSPs)
chr4 (12-162)||(23974078-23974232)
chr4 (92-179)||(15239974-15240062)
chr4 (90-153)||(46224395-46224458)
chr4 (44-173)||(11153758-11153891)
chr4 (14-96)||(15706707-15706790)
chr4 (70-179)||(13884302-13884413)
chr4 (12-96)||(25126219-25126304)
chr4 (7-74)||(19611900-19611967)
[»] chr3 (8 HSPs)
chr3 (17-179)||(15777330-15777491)
chr3 (17-111)||(3290643-3290737)
chr3 (12-95)||(3593099-3593182)
chr3 (88-166)||(49969012-49969091)
chr3 (30-166)||(9733626-9733763)
chr3 (196-253)||(16216373-16216430)
chr3 (204-253)||(20905986-20906035)
chr3 (203-235)||(13921167-13921199)
[»] chr6 (5 HSPs)
chr6 (30-173)||(19769031-19769179)
chr6 (92-166)||(3851171-3851245)
chr6 (88-150)||(19400930-19400993)
chr6 (26-74)||(12987076-12987124)
chr6 (196-244)||(26278853-26278901)
[»] scaffold0281 (1 HSPs)
scaffold0281 (12-96)||(1870-1954)
[»] chr7 (5 HSPs)
chr7 (30-179)||(11508712-11508863)
chr7 (30-173)||(18147605-18147753)
chr7 (100-166)||(3387273-3387340)
chr7 (12-112)||(32945355-32945455)
chr7 (26-108)||(33721244-33721329)
[»] chr8 (4 HSPs)
chr8 (12-109)||(40391386-40391484)
chr8 (12-74)||(17290672-17290734)
chr8 (63-154)||(9883599-9883692)
chr8 (112-152)||(9883280-9883320)
[»] scaffold0009 (1 HSPs)
scaffold0009 (88-164)||(160380-160457)
[»] chr2 (6 HSPs)
chr2 (12-104)||(32623585-32623677)
chr2 (88-222)||(34491398-34491530)
chr2 (17-92)||(16093554-16093629)
chr2 (12-109)||(27386921-27387020)
chr2 (196-235)||(6880726-6880765)
chr2 (196-235)||(6875210-6875249)
[»] chr5 (5 HSPs)
chr5 (45-173)||(39176386-39176519)
chr5 (196-235)||(28710634-28710673)
chr5 (93-154)||(24068061-24068123)
chr5 (196-234)||(24186501-24186539)
chr5 (44-99)||(39435973-39436029)
[»] chr1 (4 HSPs)
chr1 (77-153)||(91082-91160)
chr1 (44-173)||(12786177-12786315)
chr1 (19-97)||(18513810-18513889)
chr1 (116-164)||(41136799-41136847)
[»] scaffold0461 (1 HSPs)
scaffold0461 (93-166)||(12303-12377)
[»] scaffold0019 (1 HSPs)
scaffold0019 (12-96)||(182968-183053)
[»] scaffold0120 (1 HSPs)
scaffold0120 (93-154)||(29143-29205)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 23974232 - 23974078
Alignment:
Q  12 agagacaaagaggaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgcaaactagaggtaa--gggggag-ttttattcat 108  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||  |||||||||||| ||||||||||||||||  ||||||| ||||||||||    
T  23974232 agagacaaagaggaatagcgagaagaacctagagaaagatttcaccgtaggaaatcatcaattctgcaaactagaggtaatggggggagtttttattcat 23974133  T
Q  109 cat-aggattgtgtactcatgtggctagtgaagggttgttaatttttattatttt 162  Q
    ||| |||  |||||| |||||||| |||||||||||||||||||||  |||||||    
T  23974132 cataagggctgtgtattcatgtggatagtgaagggttgttaattttctttatttt 23974078  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 15239974 - 15240062
Alignment:
Q  92 gggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttcttaattcttttgatga 179  Q
    ||||||||||||||||||||| || |||||| ||||||||  |||||||||||||||||||| | || |||||||||||||||||||||    
T  15239974 gggggagttttattcatcataagggttgtgtgctcatgtgtgtagtgaagggttgttaatttctgttgttttcttaattcttttgatga 15240062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 46224395 - 46224458
Alignment:
Q  90 aagggggagttttattcatcataggattgtgtactcatgtggctagtgaagggttgttaatttt 153  Q
    ||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||    
T  46224395 aagggggagttttattcattataggtttgtttactcatgtgggtagtgaagggttgttaatttt 46224458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 11153891 - 11153758
Alignment:
Q  44 agagagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaa-gggggagttt-tattcatcata-ggattgtgtactcatgtggctagtgaa 139  Q
    |||||||||||||||||  || ||||||| || | | |||||||||||| |||||||| | ||||||||||| || |||||||||||||||| |||||||    
T  11153891 agagagatttcaccgtatgaattcatcaaattcttcgaactagaggtaatgggggagtctctattcatcataagggttgtgtactcatgtgggtagtgaa 11153792  T
Q  140 gggttgttaatttttattattttcttaattcttt 173  Q
       ||||||||||||||| |||||||||| ||||    
T  11153791 aaattgttaatttttattgttttcttaatccttt 11153758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 15706790 - 15706707
Alignment:
Q  14 agacaaagaggaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaaggggg 96  Q
    ||||||||||||||||||||||||| | | || ||||||||| ||||| ||||||||||||  || ||||||||||||| ||||    
T  15706790 agacaaagaggaatagcgagaagaatctaaagggagatttcaacgtaagaaatcatcaatttcgcaaaactagaggtaatgggg 15706707  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 13884302 - 13884413
Alignment:
Q  70 caattatgcaaactagaggtaagggggagtttt--attcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttctta 166  Q
    ||||| ||| |||||||| ||||||||| || |  |||||||||| |||||||||| | |||||| |||||||| || ||||||||| |||||||||||     
T  13884302 caattttgcgaactagagataagggggaattctctattcatcataaggattgtgtatttatgtggatagtgaagagtcgttaattttcattattttctt- 13884400  T
Q  167 attcttttgatga 179  Q
    |||| ||||||||    
T  13884401 attcctttgatga 13884413  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 25126219 - 25126304
Alignment:
Q  12 agagacaaagaggaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaaggggg 96  Q
    |||| |||||||||||||||||||||||| ||||||| |||| | ||||  ||||||||||||  || |||||||||||| |||||    
T  25126219 agaggcaaagaggaatagcgagaagaacctagagagaaatttgaacgtaggaaatcatcaatttcgcaaaactagaggtatggggg 25126304  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 19611900 - 19611967
Alignment:
Q  7 ggagcagagacaaagaggaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaatt 74  Q
    |||| |||| ||| |||| ||||||||||||||| |||||||||||||| ||||   |||||||||||    
T  19611900 ggagaagaggcaaggagggatagcgagaagaacctagagagagatttcatcgtagggaatcatcaatt 19611967  T

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Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 15777330 - 15777491
Alignment:
Q  17 caaagaggaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgcaaactagaggtaagggggagttttattcatcat-agga 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||  || | |||| || |||||||||||||||||||||||||||||||||||| |||     
T  15777330 caaagaggaatagcgagaagaacctagagagagatttcaccgtaggaatttatcacttttgcaaactagaggtaagggggagttttattcatcataaggg 15777429  T
Q  116 ttgtgtactcatgtggctagtgaagggttgttaatttttattattttcttaattcttttgatga 179  Q
    ||||||||| |||||| ||||||| ||||||||||||| | | ||||||| |||| ||||||||    
T  15777430 ttgtgtacttatgtgggtagtgaa-ggttgttaattttcaatgttttctt-attcctttgatga 15777491  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 3290737 - 3290643
Alignment:
Q  17 caaagaggaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaagggggagttttattcatcat 111  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||  ||||||||||||  || |||||||| |||||||||||| |||||||||||    
T  3290737 caaagaggaatagcgagaagaacctagagagggatttaaccgtaggaaatcatcaatttcgcaaaactaga-gtaagggggagtcttattcatcat 3290643  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 3593182 - 3593099
Alignment:
Q  12 agagacaaagaggaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgcaaactagaggtaagggg 95  Q
    |||| ||| ||||||||||||||| |||| |  |||||||||| |||||  ||||||||||||  |||||||||||||||||||    
T  3593182 agaggcaaggaggaatagcgagaataacctatggagagatttctccgtaggaaatcatcaattcggcaaactagaggtaagggg 3593099  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 166
Target Start/End: Original strand, 49969012 - 49969091
Alignment:
Q  88 gtaagggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttctta 166  Q
    ||||||||| ||||||||||||||| || |||||||||| ||||| ||||||| ||||||||||||| ||  ||||||||    
T  49969012 gtaagggggggttttattcatcataagggttgtgtactcgtgtgggtagtgaaaggttgttaattttcatcgttttctta 49969091  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 9733626 - 9733763
Alignment:
Q  30 cgagaagaacccagagagagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaaggg-ggagttttattcatcata-ggattgtgtactca 126  Q
    ||||||||| | ||||||||||||||| |||  || ||||||| || | | ||||||   |||||| ||||||||||||||  || || |||||||||||    
T  9733626 cgagaagaatctagagagagatttcacagtaggaattcatcaaattcttcgaactag---taagggtggagttttattcattgtaagggttgtgtactca 9733722  T
Q  127 tgtggctagtgaagggttgttaattttta-ttattttctta 166  Q
    ||||| ||||||||||||||||||||| | |||||||||||    
T  9733723 tgtggatagtgaagggttgttaattttcatttattttctta 9733763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 16216430 - 16216373
Alignment:
Q  196 tgttgctgtaattatatgtttgattttcgtttctgaattgcgatattttcaagttaaa 253  Q
    |||| |||||||||||||||||||||||||||| |||||| ||| |||||| ||||||    
T  16216430 tgttactgtaattatatgtttgattttcgtttcagaattgtgatgttttcatgttaaa 16216373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 20906035 - 20905986
Alignment:
Q  204 taattatatgtttgattttcgtttctgaattgcgatattttcaagttaaa 253  Q
    |||||||||||||||||| ||||| ||||||| ||| |||||| ||||||    
T  20906035 taattatatgtttgatttccgtttttgaattgtgatgttttcaggttaaa 20905986  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 13921199 - 13921167
Alignment:
Q  203 gtaattatatgtttgattttcgtttctgaattg 235  Q
    |||||||||||||||||||| ||||||||||||    
T  13921199 gtaattatatgtttgatttttgtttctgaattg 13921167  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 19769031 - 19769179
Alignment:
Q  30 cgagaagaacccagagagagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaa--gggggagttt-tattcatcata-ggattgtgtact 124  Q
    ||||||||| | |||||||||||||||||||  || ||||||| || | | ||||||||||||  |||||||| | ||||||||||| || |||||||||    
T  19769031 cgagaagaatctagagagagatttcaccgtaggaattcatcaaattcttcgaactagaggtaatggggggagtctctattcatcataagggttgtgtact 19769130  T
Q  125 catgtggctagtgaagggttgttaatttttattattttcttaattcttt 173  Q
    ||||||| ||||||| | |||||||||||||||||||||||||| ||||    
T  19769131 catgtgggtagtgaaagattgttaatttttattattttcttaatccttt 19769179  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 3851171 - 3851245
Alignment:
Q  92 gggggagttttattcatcataggattgtgtactcatgtggctagtgaagggttgttaatttttattattttctta 166  Q
    |||| |||||||||||||||| | |||||||||||||||| ||||||| ||||||||| ||| ||||||| ||||    
T  3851171 ggggaagttttattcatcataaggttgtgtactcatgtgggtagtgaaaggttgttaaatttcattatttcctta 3851245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 19400993 - 19400930
Alignment:
Q  88 gtaagggggagttttattcatcat-aggattgtgtactcatgtggctagtgaagggttgttaat 150  Q
    ||||||||| |||||||||||||| ||| |||||||||| ||||| ||||||| ||||||||||    
T  19400993 gtaagggggtgttttattcatcataagggttgtgtactcgtgtgggtagtgaaaggttgttaat 19400930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 12987076 - 12987124
Alignment:
Q  26 atagcgagaagaacccagagagagatttcaccgtaacaaatcatcaatt 74  Q
    ||||||||||||||| |||||||||||||||||||   |||||||||||    
T  12987076 atagcgagaagaacctagagagagatttcaccgtatggaatcatcaatt 12987124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 26278901 - 26278853
Alignment:
Q  196 tgttgctgtaattatatgtttgattttcgtttctgaattgcgatatttt 244  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||| ||||    
T  26278901 tgttgctgtaattatatgtttgatttttgtttttgaattgtgatgtttt 26278853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 1954 - 1870
Alignment:
Q  12 agagacaaagaggaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgcaaactagaggtaaggggg 96  Q
    ||||||||||| ||||||||||||||||| | |||||||||||||||||  |||||||||||| ||||||||||||||| |||||    
T  1954 agagacaaagaagaatagcgagaagaacctacagagagatttcaccgtaggaaatcatcaattctgcaaactagaggtatggggg 1870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 11508712 - 11508863
Alignment:
Q  30 cgagaagaacccagagagagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaaggggg-agttttattcatcata-ggattgtgtactca 126  Q
    ||||||||| | |||||||||||| || |||  || ||||||| || | | ||||||||||||||||| ||||||||||||  || || ||||||| |||    
T  11508712 cgagaagaatctagagagagattttacagtagtaattcatcaaattctccgaactagaggtaaggggggagttttattcattgtaagggttgtgtaatca 11508811  T
Q  127 tgtggctagtgaagggttgttaatttttattattttcttaattcttttgatga 179  Q
    ||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||    
T  11508812 tgtggatagtgaagggttgttaattttcattattttctt-attcctttgatga 11508863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 18147605 - 18147753
Alignment:
Q  30 cgagaagaacccagagagagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaa--gggggagttt-tattcatcata-ggattgtgtact 124  Q
    ||||||||| | ||||||||||||| |||||  || ||||||| || | | ||||||||||||  |||||||| | ||||||||||| || |||||||||    
T  18147605 cgagaagaatctagagagagatttcgccgtaggaattcatcaaattctccgaactagaggtaatggggggagtctctattcatcataagggttgtgtact 18147704  T
Q  125 catgtggctagtgaagggttgttaatttttattattttcttaattcttt 173  Q
    ||||||| |||||||   ||||||||||||||| |||||||||| ||||    
T  18147705 catgtgggtagtgaaaaattgttaatttttattgttttcttaatccttt 18147753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 3387340 - 3387273
Alignment:
Q  100 tttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttctta 166  Q
    ||||||||||||| || |||||||||||||||| ||||||||||||||||| ||| ||||||| ||||    
T  3387340 tttattcatcataagggttgtgtactcatgtgggtagtgaagggttgttaaatttgattatttcctta 3387273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 32945455 - 32945355
Alignment:
Q  12 agagacaaagaggaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaa-gggggagttttattcatc 109  Q
    |||| |||||||||||||| |||||||  |  |||||||||||| ||||  ||||||||||||  || ||||||||||||| ||||||||| ||||||||    
T  32945455 agaggcaaagaggaatagccagaagaa--cttagagagatttcaacgtaggaaatcatcaatttcgcaaaactagaggtaaggggggagttatattcatc 32945358  T
Q  110 ata 112  Q
    |||    
T  32945357 ata 32945355  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 33721329 - 33721244
Alignment:
Q  26 atagcgagaagaacccagagagagatttc-accgtaacaaatcatcaattatgc-aaactagaggtaagggggagt-tttattcat 108  Q
    ||||||||||||||| ||||||||||||| || |||  || ||||| ||| ||| ||||||||| ||||||||||| |||||||||    
T  33721329 atagcgagaagaacctagagagagatttcaacggtagaaattcatctattctgcaaaactagagataagggggagtgtttattcat 33721244  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 40391484 - 40391386
Alignment:
Q  12 agagacaaagaggaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaagggggagttttattcatc 109  Q
    ||||||||||| ||||||||||||||||| | |||||||||||| | ||  ||| ||||||||  || |||||||||||||||||||||||||||||||    
T  40391484 agagacaaagatgaatagcgagaagaacctaaagagagatttcaacttagaaaaccatcaatttcgcaaaactagaggtaagggggagttttattcatc 40391386  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 17290734 - 17290672
Alignment:
Q  12 agagacaaagaggaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaatt 74  Q
    |||||||| |||||||| ||||||||||| |||||||||||| ||||||  |||| |||||||    
T  17290734 agagacaaggaggaataacgagaagaacctagagagagattttaccgtatgaaattatcaatt 17290672  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 9883692 - 9883599
Alignment:
Q  63 aaatcatcaattatgcaaactagaggtaagggggagttt-tattcatcat-aggattgtgtactcatgtggctagtgaagggttgttaattttt 154  Q
    |||||||||||| | ||||||||||||| |||||||||| |||| | ||| ||| ||||||| |||||||| | | ||||| ||||||||||||    
T  9883692 aaatcatcaattctacaaactagaggtatgggggagtttctatttaccataagggttgtgtaatcatgtggatggcgaaggattgttaattttt 9883599  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 9883320 - 9883280
Alignment:
Q  112 aggattgtgtactcatgtggctagtgaagggttgttaattt 152  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  9883320 aggattgtgtactcatgtgggtagttaagggttgttaattt 9883280  T

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Target: scaffold0009 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 160457 - 160380
Alignment:
Q  88 gtaagggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttct 164  Q
    ||||||||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||| ||| ||||||    
T  160457 gtaagggggagttttattcatcataagggttgtttactcatgtgggtagtgaagggttgttaattttcattgttttct 160380  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 32623585 - 32623677
Alignment:
Q  12 agagacaaagaggaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaagggggagttttat 104  Q
    |||| |||||||||||| ||||||||| | |||||||||||||||||||  |||||||||||| ||| ||||||||||| ||||||||||||||    
T  32623585 agaggcaaagaggaataacgagaagaatctagagagagatttcaccgtagaaaatcatcaattttgcaaaactagaggt-agggggagttttat 32623677  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 34491398 - 34491530
Alignment:
Q  88 gtaagggggagttttattcatcatagga-ttgtgtactcatgtggctagtgaagggttgttaatttttattattttcttaattcttttgatgagtatgtg 186  Q
    ||||||| ||||||||||||||||| || ||  |||||||||||| | ||||||| |||||||||||| || ||||||| |||| |||||| | | | ||    
T  34491398 gtaagggagagttttattcatcataagagttacgtactcatgtgggttgtgaaggattgttaatttttgttgttttctt-attcctttgataattttatg 34491496  T
Q  187 tttaattcgtgttgctgtaattatatgtttgatttt 222  Q
    || |||||   ||||| |||||||||||||||||||    
T  34491497 ttaaattc--attgctataattatatgtttgatttt 34491530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 16093629 - 16093554
Alignment:
Q  17 caaagaggaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgcaaactagaggtaag 92  Q
    |||||| ||||||||||| ||||| ||||||||||||||| |||  || |||||| || |||||||||||||||||    
T  16093629 caaagatgaatagcgagaggaacctagagagagatttcactgtagaaattcatcacttttgcaaactagaggtaag 16093554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 27386921 - 27387020
Alignment:
Q  12 agagacaaagaggaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaag-ggggagttttattcatc 109  Q
    |||| ||| |||| || |||||||||||| |||||||||||||||||||  ||||||| ||||  || |||||||||||||| |||| ||||||||||||    
T  27386921 agaggcaaggaggcatggcgagaagaacctagagagagatttcaccgtagaaaatcattaatttcgcaaaactagaggtaagaggggggttttattcatc 27387020  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 6880726 - 6880765
Alignment:
Q  196 tgttgctgtaattatatgtttgattttcgtttctgaattg 235  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  6880726 tgttgccgtaattatatgtttgattttcgtttctgaattg 6880765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 6875210 - 6875249
Alignment:
Q  196 tgttgctgtaattatatgtttgattttcgtttctgaattg 235  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  6875210 tgttgccgcaattatatgtttgattttcgtttctgaattg 6875249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 45 - 173
Target Start/End: Complemental strand, 39176519 - 39176386
Alignment:
Q  45 gagagatttcaccgtaacaaatcatcaattatgcaaa-ctagaggtaaggggg--agttt-tattcatcata-ggattgtgtactcatgtggctagtgaa 139  Q
    ||||||||||||| ||  ||||||||||||  ||||| |||||||||| ||||  ||| | ||||||||||| || |||||||||||||||| |||||||    
T  39176519 gagagatttcaccatagaaaatcatcaatttcgcaaaactagaggtaatgggggaagtctctattcatcataagggttgtgtactcatgtgggtagtgaa 39176420  T
Q  140 gggttgttaatttttattattttcttaattcttt 173  Q
     | ||||||||||||||| |||||||||| ||||    
T  39176419 agattgttaatttttattgttttcttaatccttt 39176386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 28710634 - 28710673
Alignment:
Q  196 tgttgctgtaattatatgtttgattttcgtttctgaattg 235  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  28710634 tgttgttgtaattatatgtttgattttcgtttctgaattg 28710673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 24068123 - 24068061
Alignment:
Q  93 ggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaattttt 154  Q
    ||||||||| |||||||||| || |||||||| | ||||| ||||||||||||||||||||||    
T  24068123 ggggagtttcattcatcataagggttgtgtacgcgtgtgggtagtgaagggttgttaattttt 24068061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 24186539 - 24186501
Alignment:
Q  196 tgttgctgtaattatatgtttgattttcgtttctgaatt 234  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  24186539 tgttgccgtaattatatgtttgattttcgtttctgaatt 24186501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 39435973 - 39436029
Alignment:
Q  44 agagagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaagggggagt 99  Q
    |||||||||||||||||  ||||||||||||   | |||||||||||||||||||||    
T  39435973 agagagatttcaccgtaggaaatcatcaatttcacaaaactagaggtaagggggagt 39436029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 91160 - 91082
Alignment:
Q  77 gcaaactagaggtaaggg-ggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttt 153  Q
    |||||||||||||||||| ||||||||||||||| || ||  | ||||||||||||| |||||||||||||||||||||    
T  91160 gcaaactagaggtaagggaggagttttattcatcgtaagggatatgtactcatgtgggtagtgaagggttgttaatttt 91082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 12786315 - 12786177
Alignment:
Q  44 agagagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaa--gggggagttt-tattcatcata-ggattgtgtactcatgtggct----a 134  Q
    |||||||||||||||||  || ||||||| || | ||||||||||||||  |||||||| | ||||||||||| || |||||||||||||||| |    |    
T  12786315 agagagatttcaccgtaggaattcatcaaattctccaaactagaggtaatggggggagtctctattcatcataagggttgtgtactcatgtgggtgggta 12786216  T
Q  135 gtgaagggttgttaatttttattattttcttaattcttt 173  Q
    ||||| | ||||||||||||||| |||||||||| ||||    
T  12786215 gtgaaagattgttaatttttattgttttcttaatccttt 12786177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 18513810 - 18513889
Alignment:
Q  19 aagaggaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaattatgc-aaactagaggtaaggggga 97  Q
    ||||||||||| |||||||||| |||||||||||| | | ||  ||||||||||||  || |||||| ||||||||||||    
T  18513810 aagaggaatagtgagaagaacctagagagagattttaacataggaaatcatcaatttcgcaaaactaaaggtaaggggga 18513889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 41136799 - 41136847
Alignment:
Q  116 ttgtgtactcatgtggctagtgaagggttgttaatttttattattttct 164  Q
    |||| ||||||||||| ||||||| ||||||||||||| ||| ||||||    
T  41136799 ttgtatactcatgtgggtagtgaatggttgttaattttcattgttttct 41136847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 12377 - 12303
Alignment:
Q  93 ggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaatttttattattttctta 166  Q
    ||||||||||||||||| || ||  | ||||||||||||| |||||||||||||||||||||  |||||||||||    
T  12377 ggggagttttattcatcgtaagggatatgtactcatgtgggtagtgaagggttgttaattttggttattttctta 12303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 183053 - 182968
Alignment:
Q  12 agagacaaagaggaatagcgagaagaacccagagagagatttcaccgtaacaaatcatcaa-ttatgcaaactagaggtaaggggg 96  Q
    |||| ||| |||| |||| |||| ||||  ||| |||||||||||||||  |||||||||| || |||||||||||||||||||||    
T  183053 agaggcaaggaggcatagggagaggaacgtagatagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggggg 182968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 29205 - 29143
Alignment:
Q  93 ggggagttttattcatcata-ggattgtgtactcatgtggctagtgaagggttgttaattttt 154  Q
    ||||||||||||||| | || || ||||||| |||||||| |||||||||||| |||||||||    
T  29205 ggggagttttattcagcgtaagggttgtgtaatcatgtgggtagtgaagggtttttaattttt 29143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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