View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3687_high_3 (Length: 603)

Name: NF3687_high_3
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3687_high_3
NF3687_high_3
[»] chr4 (1 HSPs)
chr4 (18-601)||(46223235-46223818)
[»] chr3 (3 HSPs)
chr3 (18-158)||(52972124-52972264)
chr3 (18-158)||(54586824-54586964)
chr3 (30-158)||(6161745-6161873)
[»] chr2 (4 HSPs)
chr2 (18-158)||(17312184-17312324)
chr2 (18-158)||(38619662-38619802)
chr2 (18-158)||(10924631-10924771)
chr2 (18-158)||(26263189-26263328)
[»] chr8 (5 HSPs)
chr8 (18-158)||(23710202-23710342)
chr8 (30-147)||(754503-754620)
chr8 (29-90)||(9140205-9140266)
chr8 (85-158)||(9173478-9173551)
chr8 (74-143)||(40455911-40455980)
[»] chr1 (5 HSPs)
chr1 (18-155)||(45910203-45910340)
chr1 (29-158)||(50515749-50515878)
chr1 (18-158)||(44712778-44712918)
chr1 (18-147)||(16767459-16767588)
chr1 (26-147)||(44827519-44827640)
[»] chr7 (4 HSPs)
chr7 (18-158)||(41257038-41257178)
chr7 (18-158)||(19215945-19216085)
chr7 (29-120)||(15890864-15890955)
chr7 (377-411)||(3116045-3116079)
[»] chr5 (6 HSPs)
chr5 (30-158)||(38966039-38966167)
chr5 (18-147)||(13850396-13850525)
chr5 (42-125)||(23352093-23352176)
chr5 (83-158)||(20235921-20235996)
chr5 (81-158)||(34833634-34833711)
chr5 (107-158)||(25761655-25761706)
[»] chr6 (1 HSPs)
chr6 (18-147)||(24132860-24132989)


Alignment Details
Target: chr4 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 18 - 601
Target Start/End: Complemental strand, 46223818 - 46223235
Alignment:
Q  18 atgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  46223818 atgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaaaccgagcttcctaac 46223719  T
Q  118 tttctctcgaatccactccaacaaatcattttgtgttgcaatactcacaacaaaatatattatcactcagtatgcaatttttataaggaaatcctcaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46223718 tttctctcgaatccactccaacaaatcattttgtgttgcaatactcacaacaaaatatattatcactcagtatgcaatttttataaggaaatcctcaaat 46223619  T
Q  218 gctattgaaaattttgtcaactgcattatttattcacatgaaaagactcgtaaactttttcataacacacaggtaaccaatctatctatactacataaag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46223618 gctattgaaaattttgtcaactgcattatttattcacatgaaaagactcgtaaactttttcataacacacaggtaaccaatctatctatactacataaag 46223519  T
Q  318 aaaaactaaagttcttgtcgtggggaaaactcaactaattctacatatttattataattttctatttgttttttcttaacattactcgatatggaacatt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46223518 aaaaactaaagttcttgtcgtggggaaaactcaactaattctacatatttattataattttctatttgttttttcttaacattactcgatatggaacatt 46223419  T
Q  418 ggaacttatgaatagccactcacacaatagagacgtatacatagaggtatacaagtgtgcatattactgaataaattaagatatcttcatgaaaatgatt 517  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46223418 ggaacttatgaatagccactcacacaatagagacatatacatagaggtatacaagtgtgcatattactgaataaattaagatatcttcatgaaaatgatt 46223319  T
Q  518 tttggttaggataaataaacaatggacaagtaacttctttctataatggagtggggccataacttctctcttcttctcactcga 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||    
T  46223318 tttggttaggataaataaacaatggacaagtaacttctttctataatggagtggggccataacttctctctccttgtctctcga 46223235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 6e-57; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 52972124 - 52972264
Alignment:
Q  18 atgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagc 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  52972124 atgaaccccctctttcacatatcaaagtaacaaatgcgcttcttccattgctaccgttatcggatttaccaataacagtggaaaaaccaagctttctagc 52972223  T
Q  118 tttctctcgaatccactccaacaaatcattttgtgttgcaa 158  Q
    |||||||| || ||||||||||||||||||| |||||||||    
T  52972224 tttctctccaacccactccaacaaatcatttcgtgttgcaa 52972264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 54586964 - 54586824
Alignment:
Q  18 atgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagc 117  Q
    ||||||| || ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || |||| ||||||||||||||    
T  54586964 atgaacctcccctttcacatatcaaagtaacaaatgtgtttcttccattgccaccgttatcggatttaccaataacaatgtaaaaaccgagcttcctagc 54586865  T
Q  118 tttctctcgaatccactccaacaaatcattttgtgttgcaa 158  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  54586864 tttctctcgaacccactccaacaaatcattatgtgttgcaa 54586824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 6161745 - 6161873
Alignment:
Q  30 tttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagctttctctcgaat 129  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||     
T  6161745 tttcacatatcaaagtaacaaatgtgcttcttccattgccaccgttatcgaatttaccaataacagtggaaaaaccaagcttgctagctttctctcgaac 6161844  T
Q  130 ccactccaacaaatcattttgtgttgcaa 158  Q
    ||||||||||||||||||  |||||||||    
T  6161845 ccactccaacaaatcattccgtgttgcaa 6161873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 4e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 17312184 - 17312324
Alignment:
Q  18 atgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagc 117  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||    
T  17312184 atgaacctcccctttcacatatcaaagtaacaaatgtgcttcttccattgccaccgttatcggatttaccaataacagtggaaaaaccaagcttcctagc 17312283  T
Q  118 tttctctcgaatccactccaacaaatcattttgtgttgcaa 158  Q
    |||||||| || ||||||||||||||||||  |||||||||    
T  17312284 tttctctccaacccactccaacaaatcattccgtgttgcaa 17312324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 38619802 - 38619662
Alignment:
Q  18 atgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagc 117  Q
    ||||||| || ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||| || ||||||||||     
T  38619802 atgaacctcccctttcacatatcaaagtaacaaatgcgcttcttccattgccactgttatcggatttaccaataatagtggaaaaaccaagcttcctaga 38619703  T
Q  118 tttctctcgaatccactccaacaaatcattttgtgttgcaa 158  Q
    |||||||| || ||||||||||||||||||  |||||||||    
T  38619702 tttctctccaacccactccaacaaatcattccgtgttgcaa 38619662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 10924771 - 10924631
Alignment:
Q  18 atgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagc 117  Q
    ||||||| |||||||||||||||| |||||||||||   |||||||||||| ||| ||||| |||||||||||||| ||  ||||  | |||||||| ||    
T  10924771 atgaacctcctctttcacatatcatagtaacaaatgcatttcttccattgccacctttatctgatttaccaataacggtttaaaattctagcttccttgc 10924672  T
Q  118 tttctctcgaatccactccaacaaatcattttgtgttgcaa 158  Q
    || |||||||| ||||||||||||||| || ||||| ||||    
T  10924671 ttcctctcgaacccactccaacaaatcgttctgtgtagcaa 10924631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 26263328 - 26263189
Alignment:
Q  18 atgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagc 117  Q
    |||||||  ||||||||||||||| |||||||||||  ||||||||||| | ||| ||||| |||||||||||||  || ||||| || |||||||| ||    
T  26263328 atgaaccttctctttcacatatcacagtaacaaatgcacttcttccatttccacctttatctgatttaccaataa-ggttgaaaatcctagcttccttgc 26263230  T
Q  118 tttctctcgaatccactccaacaaatcattttgtgttgcaa 158  Q
    || |||||||| ||||||||||||||| || ||||| ||||    
T  26263229 ttcctctcgaacccactccaacaaatcgttatgtgtagcaa 26263189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 9e-50; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 23710202 - 23710342
Alignment:
Q  18 atgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagc 117  Q
    ||||||| || |||||||||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23710202 atgaacctcccctttcacatatcaaggtaacaaaggcgcttcttccattgccaccgttatcggatttaccaataacagtggaaaaaccgagcttcctagc 23710301  T
Q  118 tttctctcgaatccactccaacaaatcattttgtgttgcaa 158  Q
    ||||||| ||| ||||||||||||||||||| |||||||||    
T  23710302 tttctcttgaacccactccaacaaatcatttcgtgttgcaa 23710342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 754620 - 754503
Alignment:
Q  30 tttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagctttctctcgaat 129  Q
    |||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||| ||||||||||||||     
T  754620 tttcacatatcaaagtaacaaatgcgcttcttccattgccaccattatcggatttaccaataacagtggaaaaaccaagcttccaagctttctctcgaac 754521  T
Q  130 ccactccaacaaatcatt 147  Q
    ||||||||||||||||||    
T  754520 ccactccaacaaatcatt 754503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 9140205 - 9140266
Alignment:
Q  29 ctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaat 90  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  9140205 ctttcacatatcaaagtaacaaatgagcttcttccattgccaccgttatcggatttaccaat 9140266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 9173478 - 9173551
Alignment:
Q  85 accaataacagtggaaaagccgagcttcctagctttctctcgaatccactccaacaaatcattttgtgttgcaa 158  Q
    ||||||||||||| |||| || |||||||||| |||||||| || ||||||||||||||||||| |||||||||    
T  9173478 accaataacagtgaaaaaaccaagcttcctagatttctctccaacccactccaacaaatcatttcgtgttgcaa 9173551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 40455911 - 40455980
Alignment:
Q  74 ttatcggatttaccaataacagtggaaaagccgagcttcctagctttctctcgaatccactccaacaaat 143  Q
    ||||| |||||| |||||||||| ||||| || | |||||| |||| |||| ||| ||||||||||||||    
T  40455911 ttatctgatttatcaataacagttgaaaatcctaacttccttgcttcctcttgaacccactccaacaaat 40455980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 6e-48; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 45910203 - 45910340
Alignment:
Q  18 atgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagc 117  Q
    ||||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| || |||||||||||    
T  45910203 atgaacctcccctttcacatatcaaagtaacaaatgcgcttcttccattgccaccgttatcagatttaccaataacagtggaaaaaccaagcttcctagc 45910302  T
Q  118 tttctctcgaatccactccaacaaatcattttgtgttg 155  Q
    |||||||| || |||||||||||||||||| |||||||    
T  45910303 tttctctccaacccactccaacaaatcattctgtgttg 45910340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 50515878 - 50515749
Alignment:
Q  29 ctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagctttctctcgaa 128  Q
    ||||||||||||||||||| |||||  ||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||    
T  50515878 ctttcacatatcaaagtaagaaatgcacttcttccattgccaccgttatcggatttaccaataacagtggaaaaaccaagcttcctagctttctctccaa 50515779  T
Q  129 tccactccaacaaatcattttgtgttgcaa 158  Q
     ||||||||||||||||||  |||||||||    
T  50515778 cccactccaacaaatcattccgtgttgcaa 50515749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 44712778 - 44712918
Alignment:
Q  18 atgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagc 117  Q
    ||||||| || ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||||| || |||||||||||    
T  44712778 atgaacctcccctttcacatatcaaagtaacaaatgcgcttcttccattgccactgttatcggatttaccaataacaatggaaaaaccaagcttcctagc 44712877  T
Q  118 tttctctcgaatccactccaacaaatcattttgtgttgcaa 158  Q
    |||||||| || ||||| ||||||||||||  |||||||||    
T  44712878 tttctctccaacccacttcaacaaatcattccgtgttgcaa 44712918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 16767459 - 16767588
Alignment:
Q  18 atgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagc 117  Q
    ||||||| ||| ||||||||||||  ||||||||||  ||||||||||||  | | ||||||||||||||||| ||  | | ||| || |||||||| ||    
T  16767459 atgaacctcctatttcacatatcacggtaacaaatgcacttcttccattgtcatctttatcggatttaccaatgacgattgtaaatccaagcttccttgc 16767558  T
Q  118 tttctctcgaatccactccaacaaatcatt 147  Q
    ||||||||||| | ||||||||||||||||    
T  16767559 tttctctcgaacctactccaacaaatcatt 16767588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 26 - 147
Target Start/End: Complemental strand, 44827640 - 44827519
Alignment:
Q  26 cctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagctttctctc 125  Q
    ||||||||||||||||  ||||||||    ||||||||||||  ||| ||||||||||||||||| || || | ||| || |||||||| | ||||||||    
T  44827640 cctctttcacatatcacggtaacaaaaacacttcttccattgtcacctttatcggatttaccaatgacggttgtaaatccaagcttccttgttttctctc 44827541  T
Q  126 gaatccactccaacaaatcatt 147  Q
    ||| ||||||||| ||||||||    
T  44827540 gaacccactccaataaatcatt 44827519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 41257038 - 41257178
Alignment:
Q  18 atgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagc 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| || |||||  ||||    
T  41257038 atgaacctcctctttcacatatcaaagtaacaaatgtgcttcttccattgccaccgttatcagatttaccaataacagtggaaaaaccaagctttttagc 41257137  T
Q  118 tttctctcgaatccactccaacaaatcattttgtgttgcaa 158  Q
    |||||||| || ||||||||||||||| ||  |||||||||    
T  41257138 tttctctctaacccactccaacaaatcgttccgtgttgcaa 41257178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 19216085 - 19215945
Alignment:
Q  18 atgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagc 117  Q
    ||||||| || |||||||||| |||||||||||||| | |||||| ||||| |||||||||||||||||||||||||||||||||  | |||||||||||    
T  19216085 atgaacctcccctttcacataccaaagtaacaaatgcgtttcttcaattgccaccgttatcggatttaccaataacagtggaaaaatcaagcttcctagc 19215986  T
Q  118 tttctctcgaatccactccaacaaatcattttgtgttgcaa 158  Q
    |||||||| |  |||||||||||||||||| ||||||||||    
T  19215985 tttctctctatcccactccaacaaatcattatgtgttgcaa 19215945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 15890955 - 15890864
Alignment:
Q  29 ctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagcttt 120  Q
    ||||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  15890955 ctttcacatatcaaagtaacaaatgcgcttcttcaattgtcaccgttatcggatttaccaataacagtggaaaaaccgagcttcctaacttt 15890864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 411
Target Start/End: Complemental strand, 3116079 - 3116045
Alignment:
Q  377 ttctatttgttttttcttaacattactcgatatgg 411  Q
    ||||| |||||||||||||||||||||||||||||    
T  3116079 ttctacttgttttttcttaacattactcgatatgg 3116045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 38966167 - 38966039
Alignment:
Q  30 tttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagctttctctcgaat 129  Q
    ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||     
T  38966167 tttcacatatcaaagtaaccaatgcgcttcttccattgccaccgttatcggatttaacaataacagtggaaaaaccgagcttcctagctttctctcgaac 38966068  T
Q  130 ccactccaacaaatcattttgtgttgcaa 158  Q
     |||||||||||||||||  |||||||||    
T  38966067 tcactccaacaaatcattccgtgttgcaa 38966039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 13850396 - 13850525
Alignment:
Q  18 atgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagc 117  Q
    ||||||| || |||||||||||| ||||||||| |  |||||||||||||| ||| ||||||||||||||||||||||||||||| || |||||||||||    
T  13850396 atgaaccacccctttcacatatcgaagtaacaactacgcttcttccattgccaccattatcggatttaccaataacagtggaaaaaccaagcttcctagc 13850495  T
Q  118 tttctctcgaatccactccaacaaatcatt 147  Q
    |||||||| || ||||||||||||||||||    
T  13850496 tttctctccaacccactccaacaaatcatt 13850525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 23352093 - 23352176
Alignment:
Q  42 aagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagctttctctc 125  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| || |||||||||||||||||||    
T  23352093 aagtaacaaatgcgcttcttccattgccaccgttatcggatttaccaataacaatggaaaaaccaagcttcctagctttctctc 23352176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 20235921 - 20235996
Alignment:
Q  83 ttaccaataacagtggaaaagccgagcttcctagctttctctcgaatccactccaacaaatcattttgtgttgcaa 158  Q
    ||||||||||||||| |||| || ||||||||||||||||||| || ||||||||||||||||||  |||||||||    
T  20235921 ttaccaataacagtgaaaaaaccaagcttcctagctttctctctaacccactccaacaaatcattccgtgttgcaa 20235996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 34833634 - 34833711
Alignment:
Q  81 atttaccaataacagtggaaaagccgagcttcctagctttctctcgaatccactccaacaaatcattttgtgttgcaa 158  Q
    ||||||| |||||||||||||| || ||||| ||||||||||||| || ||||| ||||||||||||  |||||||||    
T  34833634 atttaccgataacagtggaaaaaccaagctttctagctttctctccaacccacttcaacaaatcattccgtgttgcaa 34833711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 25761706 - 25761655
Alignment:
Q  107 agcttcctagctttctctcgaatccactccaacaaatcattttgtgttgcaa 158  Q
    |||||| |||||||||||| || | |||||||||||||||| ||||||||||    
T  25761706 agcttcttagctttctctccaaccaactccaacaaatcattctgtgttgcaa 25761655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 24132860 - 24132989
Alignment:
Q  18 atgaaccccctctttcacatatcaaagtaacaaatgtgcttcttccattgctaccgttatcggatttaccaataacagtggaaaagccgagcttcctagc 117  Q
    ||||||| ||||||||||||||||  ||||| ||||  ||||||||||||| ||| |||||||||||| |||| || |  | ||| ||    ||| | ||    
T  24132860 atgaacctcctctttcacatatcacggtaacgaatgcacttcttccattgccacctttatcggatttagcaatgacggatgtaaatccacatttctttgc 24132959  T
Q  118 tttctctcgaatccactccaacaaatcatt 147  Q
    |||| |||||| ||||||||||||||||||    
T  24132960 tttccctcgaacccactccaacaaatcatt 24132989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University