View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3687_high_31 (Length: 323)

Name: NF3687_high_31
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3687_high_31
NF3687_high_31
[»] chr7 (14 HSPs)
chr7 (49-310)||(18295037-18295298)
chr7 (84-310)||(37126587-37126810)
chr7 (54-287)||(8363714-8363949)
chr7 (95-303)||(19340943-19341144)
chr7 (111-224)||(18887197-18887310)
chr7 (111-290)||(31421942-31422121)
chr7 (156-262)||(25156522-25156628)
chr7 (99-177)||(3091408-3091488)
chr7 (80-152)||(17264496-17264568)
chr7 (49-116)||(380775-380843)
chr7 (210-261)||(10509281-10509332)
chr7 (205-310)||(41596672-41596777)
chr7 (227-261)||(10511180-10511214)
chr7 (157-194)||(3091358-3091395)
[»] chr6 (10 HSPs)
chr6 (47-310)||(27156383-27156647)
chr6 (80-310)||(10894967-10895197)
chr6 (108-310)||(97213-97410)
chr6 (84-252)||(17749961-17750129)
chr6 (57-310)||(6059751-6060005)
chr6 (56-273)||(26092576-26092796)
chr6 (56-159)||(25987979-25988084)
chr6 (53-124)||(14113897-14113969)
chr6 (46-116)||(31709552-31709622)
chr6 (205-267)||(15667170-15667231)
[»] chr1 (17 HSPs)
chr1 (46-310)||(3288048-3288315)
chr1 (80-289)||(47074402-47074609)
chr1 (149-304)||(51065032-51065187)
chr1 (145-310)||(11052520-11052685)
chr1 (84-291)||(4692619-4692823)
chr1 (86-224)||(181505-181643)
chr1 (54-310)||(27132984-27133241)
chr1 (59-150)||(51064663-51064755)
chr1 (84-159)||(16763891-16763966)
chr1 (218-310)||(25537134-25537226)
chr1 (98-161)||(8920035-8920098)
chr1 (170-225)||(25537662-25537717)
chr1 (205-267)||(20256440-20256502)
chr1 (119-184)||(12307125-12307190)
chr1 (53-118)||(48491603-48491669)
chr1 (126-159)||(10801036-10801069)
chr1 (46-118)||(25537789-25537862)
[»] chr5 (17 HSPs)
chr5 (46-290)||(19676814-19677060)
chr5 (61-285)||(35634958-35635183)
chr5 (46-280)||(19663000-19663235)
chr5 (46-285)||(38395008-38395244)
chr5 (59-304)||(37259121-37259366)
chr5 (46-246)||(19647027-19647223)
chr5 (127-310)||(22270301-22270484)
chr5 (53-144)||(38352107-38352199)
chr5 (84-166)||(29086266-29086350)
chr5 (84-150)||(42740265-42740330)
chr5 (50-116)||(7349571-7349638)
chr5 (46-116)||(34438391-34438462)
chr5 (205-267)||(28313378-28313440)
chr5 (205-310)||(23121063-23121168)
chr5 (111-172)||(13626857-13626918)
chr5 (110-150)||(21744499-21744539)
chr5 (184-240)||(38352052-38352108)
[»] chr8 (9 HSPs)
chr8 (57-297)||(20098937-20099177)
chr8 (54-291)||(18427617-18427855)
chr8 (127-310)||(42809582-42809765)
chr8 (87-310)||(32382159-32382373)
chr8 (87-310)||(32436114-32436328)
chr8 (111-310)||(33363645-33363843)
chr8 (88-224)||(35538722-35538858)
chr8 (205-310)||(12868392-12868497)
chr8 (210-261)||(33236607-33236658)
[»] chr2 (6 HSPs)
chr2 (46-289)||(41318093-41318336)
chr2 (58-310)||(5885317-5885560)
chr2 (84-287)||(5088660-5088860)
chr2 (135-310)||(9844782-9844956)
chr2 (104-252)||(17738017-17738163)
chr2 (205-310)||(43525278-43525383)
[»] chr4 (14 HSPs)
chr4 (56-310)||(16401015-16401270)
chr4 (58-310)||(43335298-43335541)
chr4 (84-310)||(55404985-55405208)
chr4 (46-194)||(7114327-7114476)
chr4 (53-289)||(44504730-44504967)
chr4 (111-310)||(37465935-37466134)
chr4 (149-310)||(27599196-27599357)
chr4 (201-310)||(53816242-53816351)
chr4 (127-310)||(14797296-14797479)
chr4 (59-149)||(24535093-24535184)
chr4 (149-290)||(24535989-24536123)
chr4 (48-137)||(27599661-27599751)
chr4 (84-185)||(53816146-53816247)
chr4 (205-267)||(42883686-42883748)
[»] scaffold0024 (1 HSPs)
scaffold0024 (46-285)||(11763-12003)
[»] chr3 (14 HSPs)
chr3 (55-290)||(21496670-21496905)
chr3 (46-304)||(14195187-14195445)
chr3 (84-310)||(8425234-8425452)
chr3 (84-274)||(19971934-19972121)
chr3 (59-310)||(54788819-54789079)
chr3 (127-303)||(22126461-22126637)
chr3 (127-310)||(2736553-2736736)
chr3 (127-310)||(40925599-40925782)
chr3 (53-159)||(43946346-43946453)
chr3 (94-161)||(38000464-38000531)
chr3 (46-150)||(55121318-55121423)
chr3 (151-269)||(55121058-55121176)
chr3 (205-267)||(39703064-39703126)
chr3 (205-310)||(22509666-22509771)
[»] scaffold0005 (1 HSPs)
scaffold0005 (127-310)||(42252-42435)
[»] scaffold0285 (1 HSPs)
scaffold0285 (84-159)||(7737-7812)
[»] scaffold0054 (1 HSPs)
scaffold0054 (88-159)||(3543-3614)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 49 - 310
Target Start/End: Complemental strand, 18295298 - 18295037
Alignment:
Q  49 gtgaccgccatcaaaataaactaatgtatataattatattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactaca 148  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  18295298 gtgaccgctatcaaaataaactaatgtatataattatattgtatacaatacatttaagtagtaataaataaaaaatcgatcattcaaaatttaaactaca 18295199  T
Q  149 taatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcacta 248  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||  |||||| |||||||||| || ||||||||    
T  18295198 taatatataaagtcgatcattaaatacttaaagtgacactttacgccttccgaatgacttaaaatcatccgtaattaactcggaactagtacatgcacta 18295099  T
Q  249 atttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
    |||||||||||||||||||||||||||||||||  |||||| |||||||| || ||||||||    
T  18295098 atttccctttcaatataaattgacatgttatctattagaaatctaggtcctatattctttct 18295037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 84 - 310
Target Start/End: Complemental strand, 37126810 - 37126587
Alignment:
Q  84 atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtg 183  Q
    ||||| ||||||||| |||||||||   |||||| |||||| |||||||||||||||||| | ||||||| || || | ||| |||||||| ||||||||    
T  37126810 atatttcatacaacatatttaagta---ataaaccaaaaatcgatcattcaaaatttaaagtgcataatacatcaaatcgataattaaatatttaaagtg 37126714  T
Q  184 acactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgc 283  Q
    ||| ||||||| ||| ||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| || |||| |||||||    
T  37126713 acattttacgctttccgagtgacttgaaatcatcaataattaactcggaactaatagatgcactaatttccctttcaatataaactggcatgctatctgc 37126614  T
Q  284 tagaaacctaggtcccatcttctttct 310  Q
    |||| ||| ||| |||||||| |||||    
T  37126613 tagatacccagggcccatcttgtttct 37126587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 54 - 287
Target Start/End: Complemental strand, 8363949 - 8363714
Alignment:
Q  54 cgccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataat 152  Q
    |||||||||||||||||||  ||||||| | |||||  | ||||||||||||||| || |||||| |||||| |||||||||||||||||||||||||||    
T  8363949 cgccatcaaaataaactaaaatatataaatcatattaaacacaacacatttaagtcgttataaaccaaaaatcgatcattcaaaatttaaactacataat 8363850  T
Q  153 ata-taaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatt 251  Q
    ||| |||||| | |||||| |||| |||||   |||||||||| ||| ||||||||| |||||||||||||||   || ||||||||| |||| ||||||    
T  8363849 ataataaagtcgttcattacatacctaaagatgcactttacgctttccgagtgacttgaaatcatcaataattgattcagaactaatacatgcgctaatt 8363750  T
Q  252 tccctttcaatataaattgacatgttatctgctaga 287  Q
    |||||||||||||||| ||||||  |||||||||||    
T  8363749 tccctttcaatataaactgacatactatctgctaga 8363714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 95 - 303
Target Start/End: Complemental strand, 19341144 - 19340943
Alignment:
Q  95 aacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataata-tataaagttgatcattaaatacttaaagtgacactttacg 193  Q
    ||||||||||||| ||||||||  |||||| |||||||| ||||||||| || |||||| |||||||| ||||||||||        ||| |||||||||    
T  19341144 aacacatttaagttgtaataaatcaaaaatcgatcattccaaatttaaattatataataatataaagtcgatcattaaa--------gtgtcactttacg 19341053  T
Q  194 ccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaaccta 293  Q
    | |||||| ||||||||||||||||||| ||  ||| ||||||||| |||||||||||||  |||||||||||| | | ||| ||||||||||||||  |    
T  19341052 ctttctgaatgacttaaaatcatcaatagttgactcagaactaatacatgcactaatttcattttcaatataaactaaaatgatatctgctagaaactca 19340953  T
Q  294 ggtcccatct 303  Q
    |||| |||||    
T  19340952 ggtctcatct 19340943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 18887310 - 18887197
Alignment:
Q  111 aataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaa 210  Q
    ||||||| |||||  | ||||| |||||||||||||||||||||||||||| |||||||| |||| |||||   |||||||||| ||| ||||||||| |    
T  18887310 aataaaccaaaaaccgttcatttaaaatttaaactacataatatataaagtcgatcattacatacctaaagatgcactttacgctttccgagtgacttga 18887211  T
Q  211 aatcatcaataatt 224  Q
    ||||||||||||||    
T  18887210 aatcatcaataatt 18887197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 290
Target Start/End: Complemental strand, 31422121 - 31421942
Alignment:
Q  111 aataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaa 210  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||||||||| ||| |||| |||| |||||    || |||||| ||  ||||||||| |    
T  31422121 aataaaccaaaaatcaatcattcaaaatttaaactacataatatataaagtcgattattacatacctaaagacgtacattacgcttttcgagtgacttga 31422022  T
Q  211 aatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaac 290  Q
    ||||||||||||||   ||  |||||||| |  ||||||| |||||||| || |||| ||||||| ||| ||||| ||||    
T  31422021 aatcatcaataattgattcataactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaac 31421942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 25156522 - 25156628
Alignment:
Q  156 taaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccc 255  Q
    |||||| |||||||||||| ||||||||||||||||| | ||  || ||||||||||||||||||||||  ||| ||||||| | ||||| |||||||||    
T  25156522 taaagtcgatcattaaatatttaaagtgacactttacacttttcgattgacttaaaatcatcaataattgactcagaactaacacatgcattaatttccc 25156621  T
Q  256 tttcaat 262  Q
    | |||||    
T  25156622 tatcaat 25156628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 3091488 - 3091408
Alignment:
Q  99 catttaagtagtaataaacaaaaaattgatcattcaaaatttaaactac--ataatatataaagttgatcattaaatactt 177  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||||||  |||||| ||||||| |||||||||||||||    
T  3091488 catttaagttgtaataaacaaaaattcgatcattcaaaatttaaactacatataatacataaagtcgatcattaaatactt 3091408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 17264496 - 17264568
Alignment:
Q  80 aattatattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataat 152  Q
    |||||||||| ||||||||||||||||| ||||||||  |||||  |||||||||||||||||||||||||||    
T  17264496 aattatattgtatacaacacatttaagtcgtaataaatcaaaaaccgatcattcaaaatttaaactacataat 17264568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 380843 - 380775
Alignment:
Q  49 gtgaccgccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaa 116  Q
    ||||||| ||||||||||||||||  ||||||| | ||||||||||||||| |||||||| ||||||||    
T  380843 gtgaccgtcatcaaaataaactaaaatatataaatcatattgcatacaacaaatttaagttgtaataaa 380775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 10509281 - 10509332
Alignment:
Q  210 aaatcatcaataattatctcggaactaataaatgcactaatttccctttcaa 261  Q
    ||||||||||||||   ||||||||||||| |||||||||||||||||||||    
T  10509281 aaatcatcaataatagactcggaactaatacatgcactaatttccctttcaa 10509332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 310
Target Start/End: Complemental strand, 41596777 - 41596672
Alignment:
Q  205 acttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatctt 304  Q
    |||| ||||||||||||| |  ||| |||||||||  |||||||||||||||||| ||||||| || |||| ||||   |||||||| |  |||||||||    
T  41596777 acttgaaatcatcaataactgactcagaactaatacttgcactaatttccctttcgatataaactgtcatggtatcatttagaaacccacttcccatctt 41596678  T
Q  305 ctttct 310  Q
     |||||    
T  41596677 gtttct 41596672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 261
Target Start/End: Complemental strand, 10511214 - 10511180
Alignment:
Q  227 ctcggaactaataaatgcactaatttccctttcaa 261  Q
    ||||||||||||| |||||||||||||||||||||    
T  10511214 ctcggaactaatacatgcactaatttccctttcaa 10511180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 3091395 - 3091358
Alignment:
Q  157 aaagttgatcattaaatacttaaagtgacactttacgc 194  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  3091395 aaagtcgatcattaaatacttaaagtgacattttacgc 3091358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 6e-74; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 47 - 310
Target Start/End: Original strand, 27156383 - 27156647
Alignment:
Q  47 gggtgaccgccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaact 145  Q
    ||||| |||||||||||||||| |||  ||||||| | ||||||||||| |||||||||||| ||||||| | |||||||||||||||||||||||||||    
T  27156383 gggtggccgccatcaaaataaattaaaatatataaatcatattgcatactacacatttaagttgtaataagccaaaaattgatcattcaaaatttaaact 27156482  T
Q  146 acataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgca 245  Q
    ||||||||||||||    ||||||||||||||||||||||||||||||  ||   |||||||| |||||||||||||||  ||| ||||||||| |||||    
T  27156483 acataatatataaaaccaatcattaaatacttaaagtgacactttacgattttcaagtgacttgaaatcatcaataattgactcagaactaatacatgca 27156582  T
Q  246 ctaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
     |||||||||||| ||| |||| ||||||||||||||||||||||| |||||||||||| |||||    
T  27156583 ttaatttccctttaaatgtaaactgacatgttatctgctagaaacccaggtcccatcttgtttct 27156647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 80 - 310
Target Start/End: Original strand, 10894967 - 10895197
Alignment:
Q  80 aattatattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaa 179  Q
    |||||||||||||||||||||||||| | ||||||||| |||||  |||||||||||||||||||||||||||||||||||| |||||||| |||| |||    
T  10894967 aattatattgcatacaacacatttaattcgtaataaaccaaaaaccgatcattcaaaatttaaactacataatatataaagtcgatcattacatacataa 10895066  T
Q  180 agtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttat 279  Q
    ||   |||||||||| ||||||||||||| |||||||||||||||  ||||||| ||||| ||||||||||||||||||||||||||| ||||||  ||     
T  10895067 agatgcactttacgctttctgagtgacttgaaatcatcaataattgactcggaattaatagatgcactaatttccctttcaatataaactgacatactaa 10895166  T
Q  280 ctgctagaaacctaggtcccatcttctttct 310  Q
    |||||| ||||| | |||||||||| |||||    
T  10895167 ctgctaaaaacccaagtcccatcttgtttct 10895197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 108 - 310
Target Start/End: Complemental strand, 97410 - 97213
Alignment:
Q  108 agtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgact 207  Q
    |||||||||| |||||| |||||||||||||||||| | ||||||| ||      ||| |||||||| ||||||||||| ||||||| ||| ||||||||    
T  97410 agtaataaaccaaaaatcgatcattcaaaatttaaagtgcataatacatc-----gataattaaatatttaaagtgacattttacgctttccgagtgact 97316  T
Q  208 taaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctt 307  Q
    | |||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||| |||||||| ||    
T  97315 tgaaatcatcaataattgactcggaactaatagatgcactaatttccctttcaatataaactgacatgctatctgctagatacccagggcccatcttgtt 97216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 84 - 252
Target Start/End: Complemental strand, 17750129 - 17749961
Alignment:
Q  84 atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtg 183  Q
    ||||||||||||||| ||||||||   ||||||  |||||||||||||||||||||| || ||||||||||||||| | |||||||||||||||||||||    
T  17750129 atattgcatacaacatatttaagttaaaataaattaaaaattgatcattcaaaatttgaagtacataatatataaattcgatcattaaatacttaaagtg 17750030  T
Q  184 acactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaattt 252  Q
    ||||||||||| |||||| |||||| ||||||| |||||||  ||||||||||||| ||||| ||||||    
T  17750029 acactttacgctttctgaatgacttgaaatcattaataattgactcggaactaatacatgcattaattt 17749961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 57 - 310
Target Start/End: Original strand, 6059751 - 6060005
Alignment:
Q  57 catcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatata 155  Q
    |||||||||||| |||  ||||||| | |||||| ||| |||| ||||||||  |||||||| |||||| ||||||| ||||||||||||| ||||||||    
T  6059751 catcaaaataaattaaaatatataaatcatattgtatataacatatttaagttataataaaccaaaaatcgatcatttaaaatttaaactatataatata 6059850  T
Q  156 taaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccc 255  Q
    |||| |  ||  |||||||||||||| |||| ||||||| ||   ||||||||||||||||||||||||  |||| |||||||| ||||| ||||||  |    
T  6059851 taaaatcaatagttaaatacttaaagagacattttacgcttttcaagtgacttaaaatcatcaataattgactcgaaactaatacatgcattaatttttc 6059950  T
Q  256 tttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
    ||| |||||||||||||||| |||  ||||||||| ||||| ||||||| |||||    
T  6059951 ttttaatataaattgacatgctattggctagaaacttaggttccatcttgtttct 6060005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 56 - 273
Target Start/End: Complemental strand, 26092796 - 26092576
Alignment:
Q  56 ccatcaaaataaactaatgtatataatt-atattg-catacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataata 153  Q
    |||||||||||||||||  ||||||| | |||||  ||||||||| ||||| || ||||||||  |||||| ||| ||||||||||||||||||||||||    
T  26092796 ccatcaaaataaactaaaatatataaatcatatttacatacaacatatttatgttgtaataaatcaaaaatcgataattcaaaatttaaactacataata 26092697  T
Q  154 tataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaa-ttt 252  Q
     ||||| |   | |||||||| ||||||||||||||||||  ||| ||||||||| ||||||||||||| |  ||||||||||||| || |||||| |||    
T  26092696 cataaaatcagtaattaaatatttaaagtgacactttacgttttccgagtgacttgaaatcatcaataactgactcggaactaatagatacactaacttt 26092597  T
Q  253 ccctttcaatataaattgaca 273  Q
    ||||||||||||||| |||||    
T  26092596 ccctttcaatataaactgaca 26092576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 25988084 - 25987979
Alignment:
Q  56 ccatcaaaataaactaatgtatataa-ttatatt-gcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataata 153  Q
    |||||||||||||||||  ||||||| ||||||| |||||||||| |||||||| ||||||||  |||||| ||| ||||||||||||||||||| ||||    
T  25988084 ccatcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaattaaaaatcgataattcaaaatttaaactacacaata 25987985  T
Q  154 tataaa 159  Q
     |||||    
T  25987984 cataaa 25987979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 14113897 - 14113969
Alignment:
Q  53 ccgccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaat 124  Q
    ||||||||||||||||||||  ||||||| | |||||||||| ||||||||||||||||||||||| ||||||    
T  14113897 ccgccatcaaaataaactaaaatatataaatcatattgcatagaacacatttaagtagtaataaactaaaaat 14113969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 31709552 - 31709622
Alignment:
Q  46 ggggtgaccgccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaa 116  Q
    ||||||||||| |||||| ||||||||  ||||||| | ||||||||||||||| |||||||| ||||||||    
T  31709552 ggggtgaccgctatcaaa-taaactaaaatatataaatcatattgcatacaacaaatttaagttgtaataaa 31709622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 15667170 - 15667231
Alignment:
Q  205 acttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaa 267  Q
    |||| |||||||||||||| | ||| |||||||||  |||||||||||||||||| |||||||    
T  15667170 acttgaaatcatcaataataa-ctcagaactaatacttgcactaatttccctttcgatataaa 15667231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 46 - 310
Target Start/End: Original strand, 3288048 - 3288315
Alignment:
Q  46 ggggtgaccgccatcaaaa-taaactaatg-tatataa-ttatattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaa 142  Q
    |||||| |||||||||||| ||||||||   ||||||| |||||||||||| ||||||||||||| ||||||||| ||||||| |||||| |||||||||    
T  3288048 ggggtggccgccatcaaaaataaactaaaaatatataaattatattgcatataacacatttaagttgtaataaaccaaaaattaatcatttaaaatttaa 3288147  T
Q  143 actacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaat 242  Q
    || |||| ||||||||||| |||||||||||||||||||||||  || |||| ||| ||||||||| |||||||| ||||||  ||||||||||||| ||    
T  3288148 accacatgatatataaagtcgatcattaaatacttaaagtgacgtttgacgctttccgagtgacttgaaatcatccataattgactcggaactaatacat 3288247  T
Q  243 gcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||||  |||||||||||| |||||    
T  3288248 gcactaatttcgctttcaatataagctgacatgttatctgctagaaactcaggtcccatcttatttct 3288315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 80 - 289
Target Start/End: Original strand, 47074402 - 47074609
Alignment:
Q  80 aattatattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaa 179  Q
    ||||||||||||| |||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47074402 aattatattgcatgcaacacatttaatt-gtaataaaccaaaaattgatcattcaaaatttaaactacataatatataaagtcgatcattaaatacttaa 47074500  T
Q  180 agtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttat 279  Q
    | | ||| ||||||| ||||   |||||| |||||||||||||||  ||||||||||||| || ||||||||| ||||||||| |||| |||||||||||    
T  47074501 a-taacattttacgctttctagatgacttgaaatcatcaataattgactcggaactaatacattcactaattttcctttcaatttaaactgacatgttat 47074599  T
Q  280 ctgctagaaa 289  Q
    ||||||||||    
T  47074600 ctgctagaaa 47074609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 149 - 304
Target Start/End: Original strand, 51065032 - 51065187
Alignment:
Q  149 taatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcacta 248  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  51065032 taatatataaagtcgatcattaaatacttaaagtgacactttacgcttttcgagtgacttaaaatcatcaataattgactcggaactaatacatgcacta 51065131  T
Q  249 atttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatctt 304  Q
    ||||||||||||||||||| |||| |||||||||| ||||||  || |||||||||    
T  51065132 atttccctttcaatataaactgacttgttatctgccagaaactcagatcccatctt 51065187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 145 - 310
Target Start/End: Original strand, 11052520 - 11052685
Alignment:
Q  145 tacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgc 244  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||| || ||||||||||||| ||||||||||||||  ||||| |||||||| ||||    
T  11052520 tacataatatataaagtcgatcattaaatacttaaagtgacattttatgctttctgagtgacttgaaatcatcaataatagtctcgaaactaatacatgc 11052619  T
Q  245 actaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
    |||||||| |||||||| ||||||||||||||||| ||  ||||||  ||||| |||||| |||||    
T  11052620 actaattttcctttcaacataaattgacatgttatttgtgagaaactcaggtctcatcttgtttct 11052685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 84 - 291
Target Start/End: Complemental strand, 4692823 - 4692619
Alignment:
Q  84 atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtg 183  Q
    ||||| |||||||||||||||||| ||||||||  |||||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||||| |     
T  4692823 atattccatacaacacatttaagttgtaataaatcaaaaatcgatcattcaaa-tgtaaactacataatatataaagtcgatcattaaatacttaaa-ta 4692726  T
Q  184 acactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgc 283  Q
    ||| ||||||| ||  |  ||| ||||||||||||||||||   |||||||||||| || || |||||| |||||||||||||| ||||||| |||||||    
T  4692725 acattttacgcttttcggatgatttaaaatcatcaataattgattcggaactaatacattcattaattttcctttcaatataaa-tgacatgctatctgc 4692627  T
Q  284 tagaaacc 291  Q
    ||||||||    
T  4692626 tagaaacc 4692619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 181643 - 181505
Alignment:
Q  86 attgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgac 185  Q
    |||||||| || |||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||    
T  181643 attgcatataatacatttaagtcgtaataaaccaaaaatcgatcattcaaaatttaaactacataatatataaaattgatcattacatacttaaagcgac 181544  T
Q  186 actttacgccttctgagtgacttaaaatcatcaataatt 224  Q
    ||||||||  ||| ||||||||| ||||||| |||||||    
T  181543 actttacgttttccgagtgacttgaaatcattaataatt 181505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 54 - 310
Target Start/End: Complemental strand, 27133241 - 27132984
Alignment:
Q  54 cgccatcaaaataaactaatgtatata-attatattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataat 152  Q
    |||||| ||||||||||||  |||||| || |||||  |||||||| |||||||| ||||||||  |||||  |||||||||||||||||||||||||||    
T  27133241 cgccataaaaataaactaaaatatatagatcatattaaatacaacatatttaagtcgtaataaatcaaaaaccgatcattcaaaatttaaactacataat 27133142  T
Q  153 atataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaattt 252  Q
    ||||||||| | | |||| |||| ||||     ||||||||  ||  ||||||||| |||||||||||||||   ||| |||||| | |||| |||||||    
T  27133141 atataaagtcggttattacatacctaaaaatgtactttacgtttttcgagtgacttgaaatcatcaataattgattcgaaactaaaacatgcgctaattt 27133042  T
Q  253 ccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
    ||||||||||||||| || |||  ||||||||||||||| | |||||||||| |||||    
T  27133041 ccctttcaatataaactggcatactatctgctagaaacccaagtcccatcttgtttct 27132984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 51064663 - 51064755
Alignment:
Q  59 tcaaaataaactaatgtatataa-ttatattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacata 150  Q
    ||||||||||||||  ||||||| ||||||||||||||| |||||||||| ||||||||  |||||| |||||||||||||||||||||||||    
T  51064663 tcaaaataaactaaaatatataaattatattgcatacaatacatttaagttgtaataaatcaaaaatcgatcattcaaaatttaaactacata 51064755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 16763891 - 16763966
Alignment:
Q  84 atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaa 159  Q
    ||||||||||||| |||||||||| ||||||||| |||||   ||| |||||||||||||||||||||||||||||    
T  16763891 atattgcatacaatacatttaagtcgtaataaaccaaaaacgaatcgttcaaaatttaaactacataatatataaa 16763966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 310
Target Start/End: Complemental strand, 25537226 - 25537134
Alignment:
Q  218 aataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
    |||||||| |||  || ||||| |||||||||||| | ||||||||||||||| |||| ||| ||||||||||  |||||||||||| |||||    
T  25537226 aataattaactcaaaattaatacatgcactaattttcttttcaatataaattgtcatgctatttgctagaaactcaggtcccatcttatttct 25537134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 8920098 - 8920035
Alignment:
Q  98 acatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagt 161  Q
    |||||||||| |||||||||  ||| | |||||||||||||||||| ||||||||| |||||||    
T  8920098 acatttaagttgtaataaaccgaaagtcgatcattcaaaatttaaattacataatacataaagt 8920035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 25537717 - 25537662
Alignment:
Q  170 aaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataatta 225  Q
    ||||||||||||||| |||||| || ||| ||||||||| ||||||||||||||||    
T  25537717 aaatacttaaagtgatactttatgcattccgagtgacttgaaatcatcaataatta 25537662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 20256440 - 20256502
Alignment:
Q  205 acttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaa 267  Q
    |||||||||||||||||| || |||  ||||||||  |||||||||||||||||| |||||||    
T  20256440 acttaaaatcatcaataactaactcaaaactaatacttgcactaatttccctttcgatataaa 20256502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 12307125 - 12307190
Alignment:
Q  119 aaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtga 184  Q
    |||||| |||||||||||||||||| | ||||||| ||||| | ||| |||||||| |||||||||    
T  12307125 aaaaatcgatcattcaaaatttaaagtgcataatacataaaatcgataattaaatatttaaagtga 12307190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 48491603 - 48491669
Alignment:
Q  53 ccgccatcaaaataaactaatgtatat-aattatattgcatacaacacatttaagtagtaataaaca 118  Q
    ||||||||||||||||||||  ||||| ||| ||||||  ||||||||| |||||| ||||||||||    
T  48491603 ccgccatcaaaataaactaaaatatataaatcatattgtttacaacacacttaagttgtaataaaca 48491669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 10801036 - 10801069
Alignment:
Q  126 gatcattcaaaatttaaactacataatatataaa 159  Q
    |||| |||||||||||||||||||||||||||||    
T  10801036 gatcgttcaaaatttaaactacataatatataaa 10801069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 25537862 - 25537789
Alignment:
Q  46 ggggtgaccgccatcaaaataaactaatgtatat-aattatattgcatacaacacatttaagtagtaataaaca 118  Q
    ||||||| || |||||||||||| |||  ||||| |||||||||| ||| || |||||||||| ||||||||||    
T  25537862 ggggtgatcgtcatcaaaataaattaaaatatataaattatattgtatataaaacatttaagttgtaataaaca 25537789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 46 - 290
Target Start/End: Original strand, 19676814 - 19677060
Alignment:
Q  46 ggggtgaccgccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaa-tttaaa 143  Q
    |||||| |||| |||||||||||||||  ||||||||| ||||||| |||||||||||||||| ||||||||| |||||| | ||| |||||| ||||||    
T  19676814 ggggtggccgctatcaaaataaactaaaatatataatttatattgcgtacaacacatttaagttgtaataaaccaaaaatcggtcaatcaaaaatttaaa 19676913  T
Q  144 ctacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatg 243  Q
    |||||||||||||||||| |||| ||||||||||||||||||| ||||||| ||  |||||| ||||||||||||||||||  ||||||||||||| |||    
T  19676914 ctacataatatataaagtcgatccttaaatacttaaagtgacaatttacgcttttcgagtgatttaaaatcatcaataattgactcggaactaatacatg 19677013  T
Q  244 cactaatttccctttcaatataaattgacatgttatctgctagaaac 290  Q
    |||||||||||||||||||||||| ||| ||| ||||  ||||||||    
T  19677014 cactaatttccctttcaatataaactgatatgctatccactagaaac 19677060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 61 - 285
Target Start/End: Original strand, 35634958 - 35635183
Alignment:
Q  61 aaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaa 159  Q
    ||||||||||||  ||||||| | |||||||||| ||||||||||||| ||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  35634958 aaaataaactaaaatatataaatcatattgcatataacacatttaagttgtaataaaccaaaaaacgatcattcaaaatttaaactacataatatataaa 35635057  T
Q  160 gttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttc 259  Q
    || |||||||||||||||||||||||| ||||||| ||| |||| |||| |||||||| ||||||  ||| ||||||||| ||||||||||||||||||     
T  35635058 gtcgatcattaaatacttaaagtgacattttacgctttccgagtaacttgaaatcatcgataattgactcagaactaatacatgcactaatttccctttt 35635157  T
Q  260 aatataaattgacatgttatctgcta 285  Q
    |||||||| | |||||||||||||||    
T  35635158 aatataaactaacatgttatctgcta 35635183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 280
Target Start/End: Original strand, 19663000 - 19663235
Alignment:
Q  46 ggggtgaccgccatcaaaataaactaatgtatataat-tatattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaac 144  Q
    |||||| |||| |||||||||||||||  |||||||| ||||||| ||||||||||||||||| ||||||||  |||||| ||| |||||||||||||||    
T  19663000 ggggtggccgctatcaaaataaactaaaatatataatctatattgtatacaacacatttaagttgtaataaatcaaaaatcgattattcaaaatttaaac 19663099  T
Q  145 tacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgc 244  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||| || ||  |||||| || |||||||||||||||  || | |||||||| ||||    
T  19663100 tacataatatataaagtcgatcattaaatacttaaagtgacaatttatgcttttcgagtgatttgaaatcatcaataattgacttgaaactaatacatgc 19663199  T
Q  245 actaatttccctttcaatataaattgacatgttatc 280  Q
    ||||||||| |||||||||||||  |||||| ||||    
T  19663200 actaatttcactttcaatataaaccgacatgctatc 19663235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 46 - 285
Target Start/End: Original strand, 38395008 - 38395244
Alignment:
Q  46 ggggtgaccgccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaac 144  Q
    |||||| |||| || ||||||||||||  ||||||| | |||||||||| ||||||||||||||    ||||| |||||  |||||||||||||||||||    
T  38395008 ggggtggccgcaattaaaataaactaaaatatataaatcatattgcatataacacatttaagta----taaactaaaaaacgatcattcaaaatttaaac 38395103  T
Q  145 tacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgc 244  Q
    ||||||||||||||||| |||||||| ||||||||| ||||| ||||||| ||| |||| |||| |||||||| ||||||  ||| ||||||||| ||||    
T  38395104 tacataatatataaagtcgatcattagatacttaaaatgacattttacgctttccgagtaacttgaaatcatcgataattgactcagaactaatacatgc 38395203  T
Q  245 actaatttccctttcaatataaattgacatgttatctgcta 285  Q
    |||||||||||||| |||||||| | |||||||||||||||    
T  38395204 actaatttcccttttaatataaactaacatgttatctgcta 38395244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 59 - 304
Target Start/End: Complemental strand, 37259366 - 37259121
Alignment:
Q  59 tcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatata 157  Q
    ||||||||||||||  ||||||| | ||||||||||||||| |||||||| ||||||||| |||| | ||||||||||||| |||||||| ||||| |||    
T  37259366 tcaaaataaactaaaatatataaatcatattgcatacaacatatttaagttgtaataaaccaaaagtcgatcattcaaaatgtaaactacgtaatacata 37259267  T
Q  158 aagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccctt 257  Q
    |||| |||||||||||| |||||||||||||||| || |||  |||||||| |||| ||||||||||   ||| |||||||| |||||| ||||||| ||    
T  37259266 aagtcgatcattaaatatttaaagtgacactttatgctttccaagtgacttgaaatgatcaataattgagtcgaaactaatacatgcacaaatttccttt 37259167  T
Q  258 tcaatataaattgacatgttatctgctagaaacctaggtcccatctt 304  Q
    |||||||||| ||||||| ||||  ||||||||| ||||||||||||    
T  37259166 tcaatataaactgacatgctatc-actagaaacccaggtcccatctt 37259121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 46 - 246
Target Start/End: Complemental strand, 19647223 - 19647027
Alignment:
Q  46 ggggtgaccgccatcaaaataaactaatgtatataa-ttatattgcatacaacacatttaagtagtaataaacaaaaaatt-gatcattcaaaatttaaa 143  Q
    |||||| ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||    
T  19647223 ggggtgcccgccatcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaacaaaaaaatcgttcattcaaaatttaaa 19647124  T
Q  144 ctacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatg 243  Q
    ||||||||| |||||| | ||| ||||||||||||||||||||| |      || | |||||| |||||||||||||||||  ||||||||||||| |||    
T  19647123 ctacataatgtataaaatcgataattaaatacttaaagtgacacat------ttttaagtgacgtaaaatcatcaataattgactcggaactaatacatg 19647030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 127 - 310
Target Start/End: Original strand, 22270301 - 22270484
Alignment:
Q  127 atcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattat 226  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||   |||||||| | ||| ||||||||| |||||||||||||||      
T  22270301 atcattcaaaatttaaactacataatatataaagtcgatcattacatacctaaagacgcactttacactttcggagtgacttgaaatcatcaataattga 22270400  T
Q  227 ctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
     || ||||||||| |  ||||||| ||||||||||| |||| ||||||| ||| ||||| ||||| | || ||||||| |||||    
T  22270401 ttcagaactaatacactcactaatatccctttcaatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttct 22270484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 38352199 - 38352107
Alignment:
Q  53 ccgccatcaaaataaactaatgtatat-aattatattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaac 144  Q
    ||||||| ||||||||||||  ||||| ||| |||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  38352199 ccgccattaaaataaactaaaatatatgaatcatattgcatacaacacatttaagttgtaataaaccaaaaatcgatcattcaaaatttaaac 38352107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 29086350 - 29086266
Alignment:
Q  84 atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaact--acataatatataaagttgatc 166  Q
    ||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||||| |||  |||||||||||||||| ||||    
T  29086350 atattgcatacaacatatttaagtcgtaataaaccaaaaactgatcattcaaaatttatactacacataatatataaagtcgatc 29086266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 42740265 - 42740330
Alignment:
Q  84 atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacata 150  Q
    ||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||    
T  42740265 atattgcatacaacacatt-aagtcataataaacaaaaaatcgatcattcaaaatttaaactacata 42740330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 7349638 - 7349571
Alignment:
Q  50 tgaccgccatcaaaataaactaatgtatat-aattatattgcatacaacacatttaagtagtaataaa 116  Q
    |||||||||||||||||||||||  ||||| ||| |||||| ||||||||||||||| | ||||||||    
T  7349638 tgaccgccatcaaaataaactaaaatatataaatcatattgtatacaacacatttaacttgtaataaa 7349571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 34438391 - 34438462
Alignment:
Q  46 ggggtgaccgccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaa 116  Q
    |||||| ||||| ||||||||||||||  ||||||| | ||||||||||||||| |||||||| ||||||||    
T  34438391 ggggtggccgccttcaaaataaactaaaatatataaatcatattgcatacaacaaatttaagttgtaataaa 34438462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 28313440 - 28313378
Alignment:
Q  205 acttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaa 267  Q
    |||| ||||||||||||| || ||| |||||||||  |||||||||||| |||||||||||||    
T  28313440 acttgaaatcatcaataactaactcagaactaatacttgcactaatttcactttcaatataaa 28313378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 23121063 - 23121168
Alignment:
Q  205 acttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatctt 304  Q
    |||| ||||||||||||| |  ||| |||||||||  |||||||||||||||||| ||||||| || |||| ||||   |||||||| |  |||||||||    
T  23121063 acttgaaatcatcaataactgactcagaactaatacttgcactaatttccctttcgatataaactgtcatggtatcatttagaaacccacttcccatctt 23121162  T
Q  305 ctttct 310  Q
     |||||    
T  23121163 gtttct 23121168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 13626857 - 13626918
Alignment:
Q  111 aataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaa 172  Q
    |||||||| ||| ||||| |||  |||||||||||| |||||| ||||||| ||||||||||    
T  13626857 aataaacataaagttgattattacaaatttaaactatataatacataaagtcgatcattaaa 13626918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 21744499 - 21744539
Alignment:
Q  110 taataaacaaaaaattgatcattcaaaatttaaactacata 150  Q
    |||||||| |||||| ||| |||||||||||||||||||||    
T  21744499 taataaaccaaaaatcgattattcaaaatttaaactacata 21744539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 38352108 - 38352052
Alignment:
Q  184 acactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataa 240  Q
    ||||||||| | ||| |||||||||| ||||||||||||||   |||||||||||||    
T  38352108 acactttacactttccgagtgacttagaatcatcaataattgattcggaactaataa 38352052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 57 - 297
Target Start/End: Complemental strand, 20099177 - 20098937
Alignment:
Q  57 catcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatata 155  Q
    ||||||||||||||||  ||||||||| ||||||||||||| |||||||||| ||||| ||  |||||| |||||||||||||| |||||||||||||||    
T  20099177 catcaaaataaactaaaatatataattcatattgcatacaatacatttaagttgtaatgaatcaaaaatcgatcattcaaaatt-aaactacataatata 20099079  T
Q  156 taaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccc 255  Q
    ||||||  ||||||||||| ||||||||||||||||||| || ||||||| || |||||||||||||||  |||||||||||||  |||||||||||||     
T  20099078 taaagtcaatcattaaatatttaaagtgacactttacgctttttgagtgatttgaaatcatcaataattgactcggaactaatatttgcactaatttcct 20098979  T
Q  256 tttcaatataaattgacatgttatctgctagaaacctaggtc 297  Q
    |||||||||||| | |||||||||||| |||||||| |||||    
T  20098978 tttcaatataaacttacatgttatctgttagaaacccaggtc 20098937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 54 - 291
Target Start/End: Complemental strand, 18427855 - 18427617
Alignment:
Q  54 cgccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataat 152  Q
    ||||||||||||||| |||  ||| ||| | |||||||||||||||||||||| | || |||||| ||||||  ||  ||||||||||||||||||||||    
T  18427855 cgccatcaaaataaaataaaatatttaagtcatattgcatacaacacatttaacttgttataaaccaaaaatcaattgttcaaaatttaaactacataat 18427756  T
Q  153 atataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaattt 252  Q
    | |  |||| |||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||  ||| ||||||||  || || ||||||    
T  18427755 acagtaagtcgatcattacataattgaagtgacactttacgctttctgagtgacttaaaatcatcaataattgactcagaactaatgcatacattaattt 18427656  T
Q  253 ccctttcaatataaattgacatgttatctgctagaaacc 291  Q
     |||||||||||||| |||||||||||  ||||||||||    
T  18427655 acctttcaatataaactgacatgttattagctagaaacc 18427617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 127 - 310
Target Start/End: Complemental strand, 42809765 - 42809582
Alignment:
Q  127 atcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattat 226  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||   |||||||||| ||| ||||||||| ||||||||||||||| |    
T  42809765 atcattcaaaatttaaactacataatatataaagtcgatcattacatacctaaagacgcactttacgctttccgagtgacttgaaatcatcaataattgt 42809666  T
Q  227 ctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
     || ||||||||| || ||||||| |||||||| || |||| ||||||| ||| ||||| ||||| | |||||||||| |||||    
T  42809665 ttcagaactaatacattcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgtcccatcttgtttct 42809582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 87 - 310
Target Start/End: Complemental strand, 32382373 - 32382159
Alignment:
Q  87 ttgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgaca 186  Q
    ||||||||||||||||||||| ||||||||| ||||         |||||||||||||||||||||||||||| | |||||||| ||||||||| |||||    
T  32382373 ttgcatacaacacatttaagttgtaataaaccaaaa---------tcaaaatttaaactacataatatataaattcgatcattagatacttaaactgaca 32382283  T
Q  187 ctttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctag 286  Q
    |||||||| ||  |||| |||| |||||| | ||||||  ||| ||||||||  ||||| |||||||||||| |||||||| |||||| |||||||||||    
T  32382282 ctttacgcttttcgagtaacttgaaatcaccgataattgactccgaactaatgcatgcagtaatttcccttttaatataaactgacatcttatctgctag 32382183  T
Q  287 aaacctaggtcccatcttctttct 310  Q
     || | | |||||||||| |||||    
T  32382182 taaaccatgtcccatcttgtttct 32382159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 87 - 310
Target Start/End: Complemental strand, 32436328 - 32436114
Alignment:
Q  87 ttgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgaca 186  Q
    ||||||||||||||||||||| ||||||||| ||||         |||||||||||||||||||||||||||| | |||||||| ||||||||| |||||    
T  32436328 ttgcatacaacacatttaagttgtaataaaccaaaa---------tcaaaatttaaactacataatatataaattcgatcattagatacttaaactgaca 32436238  T
Q  187 ctttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctag 286  Q
    |||||||| ||  |||| |||| |||||| | ||||||  ||| ||||||||  ||||| |||||||||||| |||||||| |||||| |||||||||||    
T  32436237 ctttacgcttttcgagtaacttgaaatcaccgataattgactccgaactaatgcatgcagtaatttcccttttaatataaactgacatcttatctgctag 32436138  T
Q  287 aaacctaggtcccatcttctttct 310  Q
     || | | |||||||||| |||||    
T  32436137 taaaccatgtcccatcttgtttct 32436114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 111 - 310
Target Start/End: Complemental strand, 33363843 - 33363645
Alignment:
Q  111 aataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaa 210  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||   |||||||||| ||| ||||||||| |    
T  33363843 aataaaccaaaaatcaatcattcaaaatttaaactacataatatataaagtcgatcattacatacctaaagacgcactttacgctttccgagtgacttga 33363744  T
Q  211 aatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
    ||||||||||||||   || ||||||||| || ||||||| ||| |||| || |||| ||||||| ||| ||||| ||||| | |||||||||| |||||    
T  33363743 aatcatcaataattgattcagaactaatacattcactaatatccttttcgatgtaaactgacatgctatttgctaaaaacc-atgtcccatcttgtttct 33363645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 224
Target Start/End: Original strand, 35538722 - 35538858
Alignment:
Q  88 tgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgacac 187  Q
    |||||||||| ||||||||| ||||||||| | |||||||  || |||| |||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  35538722 tgcatacaactcatttaagttgtaataaaccataaattgaatatgcaaagtttaaactacataatacataaagtcgatcattaaatacttaaagtgacac 35538821  T
Q  188 tttacgccttctgagtgacttaaaatcatcaataatt 224  Q
    ||||||| ||  || |||| ||||||| |||||||||    
T  35538822 tttacgcttttcgactgacgtaaaatcgtcaataatt 35538858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 12868392 - 12868497
Alignment:
Q  205 acttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatctt 304  Q
    |||| ||||||||||||| |  ||| |||||||||  |||||||||||||||||| ||||||| || |||| ||||   |||||||| |  |||||||||    
T  12868392 acttgaaatcatcaataactgactcagaactaatacttgcactaatttccctttcgatataaactgtcatggtatcatttagaaacccacttcccatctt 12868491  T
Q  305 ctttct 310  Q
     |||||    
T  12868492 gtttct 12868497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 33236607 - 33236658
Alignment:
Q  210 aaatcatcaataattatctcggaactaataaatgcactaatttccctttcaa 261  Q
    ||||||||||||||   ||||||||||||| || ||||||||||||||||||    
T  33236607 aaatcatcaataatagactcggaactaatacatacactaatttccctttcaa 33236658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 9e-67; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 46 - 289
Target Start/End: Complemental strand, 41318336 - 41318093
Alignment:
Q  46 ggggtgaccgccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaac 144  Q
    |||||| ||||||||||||||||||||  ||||||| | |||||||||| ||||||||||||| |||||||||||||||| ||||||| |||||||||||    
T  41318336 ggggtggccgccatcaaaataaactaaaatatataaatcatattgcata-aacacatttaagttgtaataaacaaaaaatcgatcatttaaaatttaaac 41318238  T
Q  145 tacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgc 244  Q
    ||||||||||||| ||  |||||||||||| ||||||||||||||||||  ||  ||||||||| |||||||||||||||  ||||||| |||||  |||    
T  41318237 tacataatatatagagccgatcattaaatatttaaagtgacactttacgattttcgagtgacttgaaatcatcaataattgactcggaagtaatatgtgc 41318138  T
Q  245 actaatttccctttcaatataaattgacatgttatctgctagaaa 289  Q
    ||||||||||||||||||||||  ||||||| ||| |||||||||    
T  41318137 actaatttccctttcaatataacctgacatgatatttgctagaaa 41318093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 58 - 310
Target Start/End: Original strand, 5885317 - 5885560
Alignment:
Q  58 atcaaaataaactaatgtatat-aattatattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatat 156  Q
    |||||||||||||||   |||| ||| |||||||||||||||||||||||| ||||||||| |||||   ||||||||||||||||||||||||||||||    
T  5885317 atcaaaataaactaaaacatatgaatcatattgcatacaacacatttaagttgtaataaaccaaaaaccaatcattcaaaatttaaactacataatatat 5885416  T
Q  157 aaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccct 256  Q
    ||||| ||||||||||||| |||||| ||||||||| | ||  |||||||||||          ||||  ||||||||||||| ||||||||||| ||||    
T  5885417 aaagtcgatcattaaatacataaagttacactttactcttttcgagtgacttaa----------aattgactcggaactaatacatgcactaattcccct 5885506  T
Q  257 ttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
    ||||||||||| | ||||| ||| |||||||||   ||||| |||||| |||||    
T  5885507 ttcaatataaactaacatgctatatgctagaaattcaggtctcatcttatttct 5885560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 84 - 287
Target Start/End: Complemental strand, 5088860 - 5088660
Alignment:
Q  84 atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtg 183  Q
    ||||| ||||||||| |||||||||   |||||| |||||| |||||||||||||||||| | ||||||| || || | ||| |||||||| ||||||||    
T  5088860 atatttcatacaacatatttaagta---ataaaccaaaaatcgatcattcaaaatttaaagtgcataatacatcaaatcgataattaaatatttaaagtg 5088764  T
Q  184 acactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgc 283  Q
    ||| ||||||| || |||||||||| |||||||||||||||  || | |||||||| ||||||||||||| ||||||||||||| ||||||| |||||||    
T  5088763 acattttacgctttttgagtgacttgaaatcatcaataattgacttgaaactaatagatgcactaatttctctttcaatataaactgacatgctatctgc 5088664  T
Q  284 taga 287  Q
    ||||    
T  5088663 taga 5088660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 135 - 310
Target Start/End: Original strand, 9844782 - 9844956
Alignment:
Q  135 aaatttaaactacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaac 234  Q
    ||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||    |||  |||||||| |||||||||||||||  |||| |||    
T  9844782 aaatttaaactacataatata-aaagtcgatcattaaatatttaaagtgacactttatattttccaagtgacttgaaatcatcaataattgactcgaaac 9844880  T
Q  235 taataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
    ||||| ||||| |||||| |||||||||||||| ||||||| |||| |||||||||||| ||||| |||| |||||    
T  9844881 taatacatgcagtaattttcctttcaatataaactgacatgctatcggctagaaacctaagtcccgtcttgtttct 9844956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 17738017 - 17738163
Alignment:
Q  104 aagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagt 203  Q
    |||| ||||||||| |||||  |||||||||||||||||| |||| ||||| |||||| ||| ||||||||||||||||| |||||||| | ||  |  |    
T  17738017 aagttgtaataaaccaaaaaacgatcattcaaaatttaaaataca-aatat-taaagtcgattattaaatacttaaagtggcactttacacttttcgtat 17738114  T
Q  204 gacttaaaatcatcaataattatctcggaactaataaatgcactaattt 252  Q
     |||| |||||||||| ||||  ||||||||||||| ||||||||||||    
T  17738115 aacttgaaatcatcaacaattgactcggaactaatacatgcactaattt 17738163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 310
Target Start/End: Complemental strand, 43525383 - 43525278
Alignment:
Q  205 acttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatctt 304  Q
    |||| ||||||||||||| |  ||| |||||||||  ||||||| |||||||||| ||||||| || |||| ||||   |||||||| |  |||||||||    
T  43525383 acttgaaatcatcaataactgactcagaactaatacttgcactagtttccctttcgatataaactgtcatggtatcatttagaaacccacttcccatctt 43525284  T
Q  305 ctttct 310  Q
     |||||    
T  43525283 gtttct 43525278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 56 - 310
Target Start/End: Complemental strand, 16401270 - 16401015
Alignment:
Q  56 ccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatat 154  Q
    ||||||||||||| | |  ||||||| | |||||||||||||||||||||||| |||||||||  ||||| || |||||||||||||||||||||||||     
T  16401270 ccatcaaaataaagttaaatatataaatcatattgcatacaacacatttaagttgtaataaaccgaaaatcgaacattcaaaatttaaactacataataa 16401171  T
Q  155 ataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttcc 254  Q
    ||||| | |||||||||||| |||| |||||||||||||| |||| |||||||| |||||||||||||||  ||||||||||||| ||||||||||||||    
T  16401170 ataaattcgatcattaaatatttaatgtgacactttacgctttctaagtgacttgaaatcatcaataattgactcggaactaatacatgcactaatttcc 16401071  T
Q  255 ctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
    |||||||||||||  |||||  || | |||||||||  |||||||||||| |||||    
T  16401070 ctttcaatataaagcgacatactacccgctagaaactcaggtcccatcttgtttct 16401015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 58 - 310
Target Start/End: Original strand, 43335298 - 43335541
Alignment:
Q  58 atcaaaataaactaatgtatat-aattatattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatat 156  Q
    |||||| ||||||||  ||||| ||| |||||||||||||||||||||||| |||||| || |||||  |||||||||||||||||||||||||||||||    
T  43335298 atcaaagtaaactaaaatatatgaatcatattgcatacaacacatttaagttgtaatataccaaaaaccgatcattcaaaatttaaactacataatatat 43335397  T
Q  157 aaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccct 256  Q
    ||||| ||||||||||||| |||||||||||||||| ||||| |||||||||||          ||||  ||||||||||||| ||||||||||||||||    
T  43335398 aaagtcgatcattaaatacataaagtgacactttactccttccgagtgacttaa----------aattgactcggaactaatacatgcactaatttccct 43335487  T
Q  257 ttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
    ||||||||||| | ||||| ||| ||||||||| | |||||||||||| |||||    
T  43335488 ttcaatataaactaacatgctatatgctagaaatccaggtcccatcttatttct 43335541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 84 - 310
Target Start/End: Complemental strand, 55405208 - 55404985
Alignment:
Q  84 atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtg 183  Q
    ||||| ||||||||| |||||||||   |||||| ||||||||||||||||||||||||| | ||||||| || || | ||| |||||||| ||||||||    
T  55405208 atatttcatacaacatatttaagta---ataaaccaaaaattgatcattcaaaatttaaagtgcataatacatcaaatcgataattaaatatttaaagtg 55405112  T
Q  184 acactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgc 283  Q
    ||| ||||||| ||| ||||||||| |||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||    
T  55405111 acattttacgctttccgagtgacttgaaatcatcaataattgactcggaactaatagatgcactaatttccctttcaatataaactgacatgctatctgc 55405012  T
Q  284 tagaaacctaggtcccatcttctttct 310  Q
    |||| ||| ||| |||||||| |||||    
T  55405011 tagatacccagggcccatcttgtttct 55404985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 46 - 194
Target Start/End: Complemental strand, 7114476 - 7114327
Alignment:
Q  46 ggggtgaccgccatcaaaataaactaatgtatataa-ttatattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaac 144  Q
    ||||||||||| |||||||| ||||||  ||||||| ||||||||||||||| |||||||||| ||||||||| |||||| ||||||||||||||||||     
T  7114476 ggggtgaccgctatcaaaatgaactaaaatatataaattatattgcatacaatacatttaagttgtaataaactaaaaatcgatcattcaaaatttaaat 7114377  T
Q  145 tacataatatataaagttgatcattaaatacttaaagtgacactttacgc 194  Q
    ||||||||||| |||||||||||||||||| |||||||||||| ||||||    
T  7114376 tacataatataaaaagttgatcattaaataattaaagtgacaccttacgc 7114327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 53 - 289
Target Start/End: Complemental strand, 44504967 - 44504730
Alignment:
Q  53 ccgccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataa 151  Q
    |||||||||||||||| |||  ||||||| | ||||| |||||||||||||||||| ||||||||  ||||||  |||||| ||||||||||||||||||    
T  44504967 ccgccatcaaaataaattaaaatatataaatcatattacatacaacacatttaagtcgtaataaatcaaaaatcaatcatttaaaatttaaactacataa 44504868  T
Q  152 tatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatt 251  Q
    |||||||||| ||| |||| |||| |||||     |||||||  ||| ||||||  | |||||||||||||||   |||||||||||| ||||  |||||    
T  44504867 tatataaagtcgatgattacatacctaaagatgttctttacgttttccgagtgatctgaaatcatcaataattgattcggaactaatacatgctttaatt 44504768  T
Q  252 tccctttcaatataaattgacatgttatctgctagaaa 289  Q
    | |||||||||||||| |||| |||||| |||||||||    
T  44504767 ttcctttcaatataaactgacttgttatatgctagaaa 44504730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 111 - 310
Target Start/End: Original strand, 37465935 - 37466134
Alignment:
Q  111 aataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaa 210  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||||||||| |||||||  |||| |||||  |||||||| || ||| ||||||||| |    
T  37465935 aataaaccaaaaatcaatcattcaaaatttaaactacataatatataaagtcgatcattgcatacctaaagacacactttaggctttccgagtgacttga 37466034  T
Q  211 aatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
    ||||||||| ||||   || ||||||||| || ||||||| |||||||| || |||| | ||||| ||| ||||| ||||  | |||||||||| |||||    
T  37466035 aatcatcaaaaattgattcagaactaatacattcactaatatccctttcgatgtaaactcacatgctatttgctaaaaactcatgtcccatcttgtttct 37466134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 149 - 310
Target Start/End: Complemental strand, 27599357 - 27599196
Alignment:
Q  149 taatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcacta 248  Q
    |||||||| ||||  |||| ||| |||||||||||||  ||||||| ||   |||||||||||||  | |||||||  ||||||||||||| ||||||||    
T  27599357 taatatatgaagtcaatcagtaagtacttaaagtgacgttttacgcttttcaagtgacttaaaattgttaataattgactcggaactaatacatgcacta 27599258  T
Q  249 atttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
    || |||||||||||||||| ||||||| ||||| ||||||||| | ||| |||||| |||||    
T  27599257 atatccctttcaatataaactgacatgctatcttctagaaacccaagtctcatcttgtttct 27599196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 201 - 310
Target Start/End: Original strand, 53816242 - 53816351
Alignment:
Q  201 agtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtccca 300  Q
    |||||||| |||||||||||||||  ||||||||||||| |||||||||||| ||||||  |||||||||||||| ||| ||||||||||| ||||| ||    
T  53816242 agtgacttgaaatcatcaataattgactcggaactaatacatgcactaattttcctttcggtataaattgacatgctatatgctagaaacccaggtctca 53816341  T
Q  301 tcttctttct 310  Q
    |||| |||||    
T  53816342 tcttgtttct 53816351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 310
Target Start/End: Original strand, 14797296 - 14797479
Alignment:
Q  127 atcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattat 226  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||   |||||||||| | | ||||||||| |||||||||||||||      
T  14797296 atcattcaaaatttaaactacataatatataaagtcgatcattacatacctaaagacgcactttacgcttcccgagtgacttgaaatcatcaataattga 14797395  T
Q  227 ctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
     |   |||||||| |  ||||||| |||||||| || |||| ||||||| ||| ||||| ||| | | || ||||||| |||||    
T  14797396 ttaaaaactaatacagtcactaatatccctttcgatgtaaactgacatgctatttgctaaaaatccatgttccatcttgtttct 14797479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 24535093 - 24535184
Alignment:
Q  59 tcaaaataaactaatgtatataa-ttatattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacat 149  Q
    ||||||||||||||  ||||||| ||||||| |||| ||||||||||||| |||||| || |||||| ||||||||||||||||||||||||    
T  24535093 tcaaaataaactaaaatatataaattatattacatataacacatttaagttgtaatacaccaaaaatcgatcattcaaaatttaaactacat 24535184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 149 - 290
Target Start/End: Original strand, 24535989 - 24536123
Alignment:
Q  149 taatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcacta 248  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||||| ||  |||||||||||||| |||||| |||        ||| | | ||||| ||    
T  24535989 taatatataaagtcgatcattaaatgcttaaagtgacattttacgcttttcgagtgacttaaaattatcaatgatt-------tactcagacatgcatta 24536081  T
Q  249 atttccctttcaatataaattgacatgttatctgctagaaac 290  Q
    ||||||||||||||||||| ||||||||| || |||||||||    
T  24536082 atttccctttcaatataaactgacatgttctccgctagaaac 24536123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 27599751 - 27599661
Alignment:
Q  48 ggtgaccgccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaa 137  Q
    |||||| ||||||||||||||||||  || |||| | ||||||||||||| |||||||||| ||||||||| || ||| ||||||||||||    
T  27599751 ggtgactgccatcaaaataaactaaaataaataaatcatattgcatacaatacatttaagttgtaataaaccaataatcgatcattcaaaa 27599661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 53816146 - 53816247
Alignment:
Q  84 atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtg 183  Q
    ||||| ||||||||| |||||| |  |||||||| |||||  ||||||||||||  | || || |||||||||||||| |||||| ||||||||||||||    
T  53816146 atatttcatacaacatatttaaattttaataaaccaaaaagcgatcattcaaaaagtcaattatataatatataaagtcgatcatcaaatacttaaagtg 53816245  T
Q  184 ac 185  Q
    ||    
T  53816246 ac 53816247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 42883686 - 42883748
Alignment:
Q  205 acttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaa 267  Q
    |||| |||| |||||||| || ||| |||||||||  |||||||||||||||||| |||||||    
T  42883686 acttgaaattatcaataactaactcagaactaatatttgcactaatttccctttcgatataaa 42883748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 46 - 285
Target Start/End: Original strand, 11763 - 12003
Alignment:
Q  46 ggggtgaccgccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaac 144  Q
    |||||| |||| || ||||||||||||  ||||||| | |||||||||| ||||||||||||| ||||||||| |||||  |||||||||||||||||||    
T  11763 ggggtggccgcaattaaaataaactaaaatatataaatcatattgcatataacacatttaagttgtaataaaccaaaaaacgatcattcaaaatttaaac 11862  T
Q  145 tacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgc 244  Q
    ||||||||||||||| | ||| |||| ||||||||||||||||||||||| ||| |||| |||| |||||||| ||||||  ||  ||||| ||| ||||    
T  11863 tacataatatataaaatcgataattagatacttaaagtgacactttacgctttccgagtaacttgaaatcatcgataattgacttagaacttatacatgc 11962  T
Q  245 actaatttccctttcaatataaattgacatgttatctgcta 285  Q
    |||||||||||||| |||||||| | |||||||||||||||    
T  11963 actaatttcccttttaatataaactaacatgttatctgcta 12003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 55 - 290
Target Start/End: Complemental strand, 21496905 - 21496670
Alignment:
Q  55 gccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataata 153  Q
    ||||||||||||||||||  ||||||| | ||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||| |||| |    
T  21496905 gccatcaaaataaactaaaatatataaatcatattgcatacaacacatttaagttttaataaaccaaaaattgatcattcaaaatttaaacta-ataaca 21496807  T
Q  154 tataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttc 253  Q
    |||||| | |||||||||||||||||||||||||||||||| ||  ||||||| | |||||||||||||||  |||| ||  || | || ||||||||||    
T  21496806 tataaaatcgatcattaaatacttaaagtgacactttacgcttttcgagtgacgtgaaatcatcaataattgactcgaaagaaacacatacactaatttc 21496707  T
Q  254 cctttcaatataaattgacatgttatctgctagaaac 290  Q
    |||||||||| ||| |  |||||||||||||||||||    
T  21496706 cctttcaatacaaactatcatgttatctgctagaaac 21496670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 46 - 304
Target Start/End: Original strand, 14195187 - 14195445
Alignment:
Q  46 ggggtgaccgccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaac 144  Q
    |||||||| ||||||||||||||||||  ||||||| | |||||||||||||| ||||||||| ||||||||| ||||||  |||||| |||||||||||    
T  14195187 ggggtgactgccatcaaaataaactaaaatatataaatcatattgcatacaactcatttaagttgtaataaactaaaaatcaatcatttaaaatttaaac 14195286  T
Q  145 tacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgc 244  Q
    ||||||||||||||||| |||  |||||||| |||| |||||||||||| |||   | || | | |||||||||||||||  ||||||||||||| ||||    
T  14195287 tacataatatataaagtcgatttttaaatacataaattgacactttacg-ctttaaaatggcctgaaatcatcaataattgactcggaactaatacatgc 14195385  T
Q  245 actaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatctt 304  Q
    ||||||||  |||| |||||||| | ||||||||| ||| | ||| | ||||||||||||    
T  14195386 actaatttttctttaaatataaactaacatgttatttgcgaaaaatccaggtcccatctt 14195445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 84 - 310
Target Start/End: Original strand, 8425234 - 8425452
Alignment:
Q  84 atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtg 183  Q
    ||||| ||||||||| |||||||||   |||||| |||||| |||||||||||||||||| | ||||||| ||      ||| |||||||| ||||||||    
T  8425234 atatttcatacaacatatttaagta---ataaaccaaaaatcgatcattcaaaatttaaagtgcataatacatc-----gataattaaatatttaaagtg 8425325  T
Q  184 acactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgc 283  Q
    ||| ||||||| ||| ||||||||| |||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||    
T  8425326 acattttacgctttccgagtgacttgaaatcatcaataattgactcggaactaatagatgcactaatttccctttcaatataaactgacatgctatctgc 8425425  T
Q  284 tagaaacctaggtcccatcttctttct 310  Q
    |||| ||| ||| | |||||| |||||    
T  8425426 tagatacccagggctcatcttgtttct 8425452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 84 - 274
Target Start/End: Original strand, 19971934 - 19972121
Alignment:
Q  84 atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtg 183  Q
    ||||| ||||||||| |||||||||   |||||| |||||| |||||||||||||||||| | ||||||| ||||| | ||| |||||||| ||||||||    
T  19971934 atatttcatacaacatatttaagta---ataaaccaaaaatcgatcattcaaaatttaaagtgcataatacataaaatcgataattaaatatttaaagtg 19972030  T
Q  184 acactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacat 274  Q
    ||| ||||||| ||  ||||||||| |||||||||||||||  ||||||| ||||| ||||||||||||||||||||||||||| ||||||    
T  19972031 acattttacgctttgcgagtgacttgaaatcatcaataattgactcggaattaatagatgcactaatttccctttcaatataaactgacat 19972121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 59 - 310
Target Start/End: Complemental strand, 54789079 - 54788819
Alignment:
Q  59 tcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaact--acata----- 150  Q
    ||||||||||||||  |||||||   |||||| ||| |||| |||||||| ||||||||| |||||| ||||||||||||||||||    |||||         
T  54789079 tcaaaataaactaaaatatataaaccatattgaatataacatatttaagttgtaataaaccaaaaatcgatcattcaaaatttaaatataacatatgagt 54788980  T
Q  151 -atatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaa 249  Q
     ||| ||||||| |||||||||||||||||||| ||||||||||| ||  || | |||| |||||||||||||||  ||||||||||||| |||||||||    
T  54788979 aataaataaagtcgatcattaaatacttaaagttacactttacgcttttcgaataacttgaaatcatcaataattgactcggaactaatacatgcactaa 54788880  T
Q  250 tttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
    |||| ||||||||||||  |||||||||||||  |||||||  |||||||||||| |||||    
T  54788879 tttcactttcaatataatctgacatgttatctcttagaaactcaggtcccatcttgtttct 54788819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 127 - 303
Target Start/End: Original strand, 22126461 - 22126637
Alignment:
Q  127 atcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattat 226  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||   |||||||||| ||||||||||||| |||||||||||||||      
T  22126461 atcattcaaaatttaaactacataatatataaagttgatcattacatacctaaagacgcactttacgctttctgagtgacttgaaatcatcaataattga 22126560  T
Q  227 ctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatct 303  Q
     || ||||||||| || ||||||| ||| |||| || |||| ||||||| ||| ||||| ||||| | |||||||||    
T  22126561 ttcagaactaatacattcactaatatccttttcgatgtaaactgacatgctatttgctaaaaacccatgtcccatct 22126637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 127 - 310
Target Start/End: Complemental strand, 2736736 - 2736553
Alignment:
Q  127 atcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattat 226  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||   |||||||||| ||| ||||||||| |||||||||||||||      
T  2736736 atcattcaaaatttaaactacataatatataaagtcgatcattacatacctaaagacgcactttacgctttcggagtgacttgaaatcatcaataattga 2736637  T
Q  227 ctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
     || ||||||||| |  ||||||| |||||||| || |||| ||||||| ||| ||||| ||||| | || ||||||| |||||    
T  2736636 ttcagaactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttct 2736553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 310
Target Start/End: Complemental strand, 40925782 - 40925599
Alignment:
Q  127 atcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattat 226  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||   |||||||||| | | ||||||||| |||||||||||||||      
T  40925782 atcattcaaaatttaaactacataatatataaagtcgatcattacatacctaaagacgcactttacgcttccggagtgacttgaaatcatcaataattga 40925683  T
Q  227 ctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
     ||  |||||||| |  ||||||| |||||||| || |||| ||||||| ||| ||||| ||||| | || ||||||| |||||    
T  40925682 ttcataactaatacactcactaatatccctttcgatgtaaactgacatgctatttgctaaaaacccatgttccatcttgtttct 40925599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 43946453 - 43946346
Alignment:
Q  53 ccgccatcaaaataaactaatgtatataatt-atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataa 151  Q
    ||||||||||||||||||||  ||||||| | ||||||  ||||||||||||||||   ||||||  |||||| ||||||||||||||||||||||||||    
T  43946453 ccgccatcaaaataaactaaaatatataaatcatattggttacaacacatttaagtcaaaataaatcaaaaatcgatcattcaaaatttaaactacataa 43946354  T
Q  152 tatataaa 159  Q
    ||||||||    
T  43946353 tatataaa 43946346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 38000464 - 38000531
Alignment:
Q  94 caacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaagt 161  Q
    |||||||||||||| |||||| || |||||| ||||||||||||||||||||||||||||||||||||    
T  38000464 caacacatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacataatatataaagt 38000531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 55121423 - 55121318
Alignment:
Q  46 ggggtgaccgccatcaaaataaactaatgtatataa-ttatattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaac 144  Q
    |||||| |||||||||||||||| |||  ||||||| ||||||||||| |||||||||||| | ||||||||  |||||| ||||||||||||| |||||    
T  55121423 ggggtggccgccatcaaaataaattaaaatatataaattatattgcatgcaacacatttaacttgtaataaatcaaaaatcgatcattcaaaatctaaac 55121324  T
Q  145 tacata 150  Q
     |||||    
T  55121323 aacata 55121318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 269
Target Start/End: Complemental strand, 55121176 - 55121058
Alignment:
Q  151 atatataaagttgatcattaaatacttaaagtgacactttacg-ccttctgagtgacttaaaatcatcaataattatctcggaactaataaatgcactaa 249  Q
    ||||||||||| |||||||||||| |||||| |||||||||||   |||||| |||||| |||||||||||||||  ||  ||||||||| |   |||||    
T  55121176 atatataaagtcgatcattaaatatttaaag-gacactttacgtttttctgaatgacttgaaatcatcaataattgactaagaactaatacacatactaa 55121078  T
Q  250 tttccctttcaatataaatt 269  Q
    ||| | ||| ||||||||||    
T  55121077 ttttctttttaatataaatt 55121058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 39703126 - 39703064
Alignment:
Q  205 acttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaa 267  Q
    |||| |||| |||||||| || ||| |||||||||  |||||||||||||||||| |||||||    
T  39703126 actttaaattatcaataactaactcagaactaatatttgcactaatttccctttcgatataaa 39703064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 22509666 - 22509771
Alignment:
Q  205 acttaaaatcatcaataattatctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatctt 304  Q
    |||| ||||||||||||| |  ||| |||||||||  ||||||||| |||||||| ||||||| || |||| ||||   |||||||| |  |||||||||    
T  22509666 acttgaaatcatcaataactgactcagaactaatacttgcactaatatccctttcgatataaactgtcatggtatcatttagaaacccacttcccatctt 22509765  T
Q  305 ctttct 310  Q
     |||||    
T  22509766 gtttct 22509771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 310
Target Start/End: Complemental strand, 42435 - 42252
Alignment:
Q  127 atcattcaaaatttaaactacataatatataaagttgatcattaaatacttaaagtgacactttacgccttctgagtgacttaaaatcatcaataattat 226  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||   |||||||||| | | ||||||||| |||||||||||||||      
T  42435 atcattcaaaatttaaactacataatatataaagtcgatcattacatacctaaagacgcactttacgcttcccgagtgacttgaaatcatcaataattga 42336  T
Q  227 ctcggaactaataaatgcactaatttccctttcaatataaattgacatgttatctgctagaaacctaggtcccatcttctttct 310  Q
     |   |||||||| |  ||||||| |||||||| || |||| ||||||| ||| ||||| ||| | | || ||||||| |||||    
T  42335 ttaaaaactaatacagtcactaatatccctttcgatgtaaactgacatgctatttgctaaaaatccatgttccatcttgtttct 42252  T

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Target: scaffold0285 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 7737 - 7812
Alignment:
Q  84 atattgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaa 159  Q
    ||||||||||||| |||||||||| ||||||||| |||||   ||| |||||||||||||||||||||||||||||    
T  7737 atattgcatacaatacatttaagtcgtaataaaccaaaaacgaatcgttcaaaatttaaactacataatatataaa 7812  T

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Target: scaffold0054 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 3614 - 3543
Alignment:
Q  88 tgcatacaacacatttaagtagtaataaacaaaaaattgatcattcaaaatttaaactacataatatataaa 159  Q
    ||||||||| |||||||||| ||||||||| |||||   ||| |||||||||||||||||||||||||||||    
T  3614 tgcatacaatacatttaagtcgtaataaaccaaaaacgaatcgttcaaaatttaaactacataatatataaa 3543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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