View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3687_high_35 (Length: 286)
Name: NF3687_high_35
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_high_35 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 9300529 - 9300261
Alignment:
| Q |
1 |
agcctattgacgccatcaacattttctttgactctgaatacccatttgcatcctatatatggcggttctttttgttgggagagaaacccaatcccaagtg |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
9300529 |
agcctattgactccatcaacattttctttgactctgaatacccatttgcatcctatatatggcggttctttttgttgggagagaaaccccatctcaagtg |
9300430 |
T |
|
| Q |
101 |
ttatttctttctaatgaatcaaactcttcttgcatagtagcatgccattgggggtttatagagtgcttgtttagcaattttagattcatagtaagtaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9300429 |
ttatttctttctaatgaatcaaactcttcttgcatagtagcatgccatt-ggggtttatagagtgcttgtttagcaattttagattcatagtaaggaaca |
9300331 |
T |
|
| Q |
201 |
aagtgggcttcagtctaggctgcacaatgccagacttggctctagtcctcataggatgatcattagtgag |
270 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9300330 |
aagtgggcttcagtctaggctgcacaaagccagacttggctctagtcctcataggacgatcattagtgag |
9300261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University