View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_high_36 (Length: 279)
Name: NF3687_high_36
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 47267940 - 47268195
Alignment:
| Q |
19 |
aagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatcatcccacatatgaatgt |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47267940 |
aagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatcatcccacataagaatgt |
47268039 |
T |
|
| Q |
119 |
agaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaattaa |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47268040 |
agaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaattaa |
47268139 |
T |
|
| Q |
219 |
cctaaagcaagtggttcctagttttgtcatgtttatctttttgtttgtcgtctgtg |
274 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47268140 |
cctaaagcaagtggttcctagttttgtcatgtttatctttttgtttgtcgtttgtg |
47268195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 47283905 - 47284133
Alignment:
| Q |
19 |
aagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatcatcccacatatgaatgt |
118 |
Q |
| |
|
||||| |||| |||||||||||||| ||||||||||||| | |||| |||||||||| ||||| ||||||||| | ||||| |||||||||| ||||| |
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| T |
47283905 |
aagtgaatttcggatggggtgaggcggtgtatggtggagtggtaaaaggtggggctggacctttacctggagcaacgtatataatcccacataagaatgc |
47284004 |
T |
|
| Q |
119 |
agaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaattaa |
218 |
Q |
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|||||||||||||||||| ||||||||| ||| || ||| ||||| |||||||||||||||| ||||||||||| ||||| ||||||| |||||| || |
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| T |
47284005 |
agaaggagaagaaggtttaatattactaattttcttaacctctgaagttatgaagaggtttgctgaagagttagataagatgtttggtaatcaaaatcaa |
47284104 |
T |
|
| Q |
219 |
cctaaagcaagtggttcctagttttgtcat |
248 |
Q |
| |
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|||| | | | ||| ||||||||||||||| |
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| T |
47284105 |
cctacaacgattgg-tcctagttttgtcat |
47284133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 47298915 - 47298719
Alignment:
| Q |
19 |
aagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatcatcccacatatgaatgt |
118 |
Q |
| |
|
||||| |||| ||||||||||| | ||||||||||||| ||||||| |||||||||| ||||||||||||||| |||||||| ||||| ||| |||| | |
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|
| T |
47298915 |
aagtgaatttcggatggggtgaaggggtgtatggtggagttgcaaaaggtggggctggaccttttcctggagcaacctatatcgtcccatataagaatat |
47298816 |
T |
|
| Q |
119 |
agaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaat |
215 |
Q |
| |
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| ||||||||||| ||| || |||| | |||||||| ||| ||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||| |
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| T |
47298815 |
aaaaggagaagaaactttgatgttaccaatttgtttgccctctgaagatatgaagaggtttgcaaaagagttggatgagatgcttggtaaccaaaat |
47298719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 47279312 - 47279540
Alignment:
| Q |
19 |
aagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatcatcccacatatgaatgt |
118 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| | | ||| ||| ||| |||||||| ||| ||||| | | |||||||||||||| ||||| |
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|
| T |
47279312 |
aagtgaattttggatggggtgaggcggtgtatggtggggtggtaaattgtgtggccgggcctttacctagagcaacgtttatcatcccacataagaatgc |
47279411 |
T |
|
| Q |
119 |
agaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaattaa |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| || ||| ||||| |||||||||||||||| ||||||||||| ||||| ||||||| |||||| || |
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|
| T |
47279412 |
agaaggagaagaaggtttgatattactaattttcttaacctctgaagttatgaagaggtttgctgaagagttagataagatgtttggtaaccaaaatcaa |
47279511 |
T |
|
| Q |
219 |
cctaaagcaagtggttcctagttttgtcat |
248 |
Q |
| |
|
|||| | ||| ||| |||||||||||||| |
|
|
| T |
47279512 |
cctacaacaattgg-gcctagttttgtcat |
47279540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 47292308 - 47292105
Alignment:
| Q |
19 |
aagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatcatcccacatatgaatgt |
118 |
Q |
| |
|
||||| ||||||| |||||||| | ||||||||||||| ||||||| |||||||||| | ||||||||| || |||||||| ||||| ||| |||| | |
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|
| T |
47292308 |
aagtgaattttggttggggtgaaggggtgtatggtggagttgcaaaaggtggggctggaacatttcctggatcaacctatatcgtcccatataagaatat |
47292209 |
T |
|
| Q |
119 |
agaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaattaa |
218 |
Q |
| |
|
| | ||||||||| ||| || |||| | |||||||| ||| ||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||||| |
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|
| T |
47292208 |
aaatggagaagaaactttgatgttaccaatttgtttgccctctgaagatatgaagaggtttgcaaaagagttggatgagatgcttggtaaccaaaattat |
47292109 |
T |
|
| Q |
219 |
ccta |
222 |
Q |
| |
|
|||| |
|
|
| T |
47292108 |
ccta |
47292105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 47243111 - 47243239
Alignment:
| Q |
94 |
cctatatcatcccacatatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttaga |
193 |
Q |
| |
|
||||||| |||| |||| ||||| | ||||||||||||| || ||||||| | |||| ||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
47243111 |
cctatattgtcccgcataagaatgcaaaaggagaagaagggttaatattaccaatttgcttgccccctgaagatatgaagaggtttgctaaagagttaga |
47243210 |
T |
|
| Q |
194 |
tgagatgcttggtaaacaaaattaaccta |
222 |
Q |
| |
|
||| ||||||||||| |||||||| |||| |
|
|
| T |
47243211 |
tgatatgcttggtaaccaaaattatccta |
47243239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 47257163 - 47257366
Alignment:
| Q |
19 |
aagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatcatcccacatatgaatgt |
118 |
Q |
| |
|
||||| |||| ||||||||||| || |||||||||||||| |||||| |||| ||| |||||| ||| | | ||| | | || | |||| ||||| |
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|
| T |
47257163 |
aagtgaatttcggatggggtgaagctgtgtatggtggagcagcaaaaggtggaattggatcttttcttgggggaacctttcttgtcacgcataagaatgc |
47257262 |
T |
|
| Q |
119 |
agaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaaacaaaattaa |
218 |
Q |
| |
|
| ||||||||||||| || ||||||| | |||| ||| | ||||| |||||||||||||| ||| ||||||||||| ||||||||||| |||||||| |
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|
| T |
47257263 |
aaaaggagaagaagggttaatattaccaatttgcttgcctcctgaagatatgaagaggtttgttaaggagttagatgatatgcttggtaaccaaaattat |
47257362 |
T |
|
| Q |
219 |
ccta |
222 |
Q |
| |
|
|||| |
|
|
| T |
47257363 |
ccta |
47257366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 20519712 - 20519901
Alignment:
| Q |
19 |
aagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagcagcctatatcatcccacatatgaatgt |
118 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| ||||||| |||||||||| ||||| ||||||| || || ||||||||| |||| |
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|
| T |
20519712 |
aagtgaattttggatggggtgaggcgaagtatggtggagttgcaaaagctggggctgggggttttcgtggagcaaccatcattgtcccacataagaattc |
20519811 |
T |
|
| Q |
119 |
agaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaa |
208 |
Q |
| |
|
| || |||| ||||||| ||||||| | ||| |||| | | ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20519812 |
aaaacaagaaaaaggtttaatattaccaatttctttgccttatgaagatatgaagaggtttgctaaagagttagatgagatgcttggtaa |
20519901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 32731778 - 32731900
Alignment:
| Q |
94 |
cctatatcatcccacatatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttaga |
193 |
Q |
| |
|
||||||| |||| |||| ||||| | ||||||||||||| || ||||| | | |||| ||| || ||||| ||||||||||||||||||||||||||| |
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|
| T |
32731778 |
cctatattgtcccgcataagaatgcaaaaggagaagaagggttaatatttccaatttgcttgccccctgaagatatgaagaggtttgctaaagagttaga |
32731877 |
T |
|
| Q |
194 |
tgagatgcttggtaaacaaaatt |
216 |
Q |
| |
|
||| ||||||||||| ||||||| |
|
|
| T |
32731878 |
tgatatgcttggtaaccaaaatt |
32731900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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