View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_high_38 (Length: 274)
Name: NF3687_high_38
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_high_38 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 46 - 274
Target Start/End: Complemental strand, 41433046 - 41432814
Alignment:
| Q |
46 |
attgaacttaatgtctaatgatgctattcttattcgatatgtgcttaaaatttttaatacaatgaataggtgaaaccttttaaagaatagtagtttgagt |
145 |
Q |
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| T |
41433046 |
attgaacttaatgtctaatgatgctattcttattagatatgtgcttaaaatttttaatacaatgaataggtgaaaccttttaaagaatagtagtttgagt |
41432947 |
T |
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| Q |
146 |
nnnnnnnnnnnnnnnn----tggattgtatttattaagtttgtgtgtgtgaaaacttgaagtgaaaagtcataatattactcatattatgctattcgagt |
241 |
Q |
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| T |
41432946 |
aaaaccaaaaaaaataaaaatggattgtatttattaagtttgtgtgtgtgaaaacttgaagcaaaaagtcataatattactcctattatgctattcgagt |
41432847 |
T |
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| Q |
242 |
ttagttatcaaggttggttgcaatgattactca |
274 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
41432846 |
ttagttatcaaggttggttgcattgattactca |
41432814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 164 - 274
Target Start/End: Original strand, 16468036 - 16468146
Alignment:
| Q |
164 |
gattgtatttattaagtttgtgtgtgtgaaaacttgaagtgaaaagtcataatattactcatattatgctattcgagtttagttatcaaggttggttgca |
263 |
Q |
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| T |
16468036 |
gattgtatttattaggtttgtgtgtgtgaaaatttgaagtgaaaagtcataatattactcctattatgctattctagtttagttaccaaggttgattgca |
16468135 |
T |
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| Q |
264 |
atgattactca |
274 |
Q |
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| T |
16468136 |
ttgactactca |
16468146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 16467704 - 16467781
Alignment:
| Q |
46 |
attgaacttaatgtctaatgatgctat-----tcttattcgatatgtgcttaaaatttttaatacaatgaataggtga |
118 |
Q |
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| T |
16467704 |
attgaacttaatgtttaatgatgctattctattcttattagatctgtgcttaaaattttaaatacaatgaataagtga |
16467781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 274
Target Start/End: Complemental strand, 35381439 - 35381332
Alignment:
| Q |
168 |
gtatttattaagtttgtgtgtgtgaaaacttgaagtgaaaagtcataatatta---ctcatattatgctattcgagtttagttatcaaggttggttgcaa |
264 |
Q |
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||||||||| | ||||||||||| |||| ||| ||||||||||||||||||| ||| |||||| | |||| ||||||||||| ||||||||||||| |
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| T |
35381439 |
gtatttatttaatttgtgtgtgttaaaatttg--gtgaaaagtcataatattattactcctattatccaattctagtttagttattaaggttggttgcat |
35381342 |
T |
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| Q |
265 |
tgattactca |
274 |
Q |
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|||||||||| |
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| T |
35381341 |
tgattactca |
35381332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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