View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_high_41 (Length: 268)
Name: NF3687_high_41
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_high_41 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 33897564 - 33897407
Alignment:
| Q |
5 |
gaagaaaatatgatttttctttgatacaagtaaattaccctcaattcataaagggataacgtataaaaaatctattacacgaagaagaagaagagatcca |
104 |
Q |
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| T |
33897564 |
gaagaaaatatgatttttctttgatacaagtaaattaccctcaattcatatagggataacgtataaaaaatctatgacacgaag------aagagatcca |
33897471 |
T |
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| Q |
105 |
aataagaacaagatatgcttaaaaagaaatcataccgtttaacatgtaataattactcaagtgt |
168 |
Q |
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| T |
33897470 |
aataagaacaagatatgcttaaaaagaaatcataccgtttaacatgtaataattactcaagtgt |
33897407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 33897380 - 33897334
Alignment:
| Q |
194 |
ttatgtgttataacaggacacgagaatagataattacaaatattgaa |
240 |
Q |
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| T |
33897380 |
ttatgtgttataacaggacacgagaatagataattacaaatattgaa |
33897334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 32988598 - 32988668
Alignment:
| Q |
5 |
gaagaaaatatgatttttctttgatacaagtaaattaccctcaattcataaagggataacgtataaaaaat |
75 |
Q |
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| T |
32988598 |
gaagaaaatatgatttttctttgatatgtgtaaattacccccaattcatcgagggataatgtataaaaaat |
32988668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 2249016 - 2249063
Alignment:
| Q |
5 |
gaagaaaatatgatttttctttgatacaagtaaattaccctcaattca |
52 |
Q |
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| T |
2249016 |
gaagaaaatatgatttttctttgatagaggtaaattatcctcaattca |
2249063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 44342280 - 44342334
Alignment:
| Q |
5 |
gaagaaaatatgatttttctttgatacaagtaaattaccctcaattcataaaggg |
59 |
Q |
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|||||||||||||||||||||||||| | || |||||||| |||||||| ||||| |
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| T |
44342280 |
gaagaaaatatgatttttctttgatagaggtgaattacccccaattcattaaggg |
44342334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 32046978 - 32046922
Alignment:
| Q |
7 |
agaaaatatgatttttctttgatacaagtaaattaccctcaattcataaagggataa |
63 |
Q |
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|||||||| |||||||||||||| |||||||||||| |||||||| ||| ||||| |
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| T |
32046978 |
agaaaatagaatttttctttgatagaagtaaattacctccaattcattaagtgataa |
32046922 |
T |
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