View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_high_47 (Length: 255)
Name: NF3687_high_47
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_high_47 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 13102842 - 13103079
Alignment:
| Q |
1 |
tcaggaagaatatcaggtgcatctgcagttcttccatccttgaaaaataatatcataccaaacacacaataatgtcaacaaaatctagcagagattacaa |
100 |
Q |
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| T |
13102842 |
tcaggaagaatatcaggtgcatctgcagttcttccatccttgaaaaatgatatcataccaatcacacaagaatgtcaacaaaatctagcagagattacaa |
13102941 |
T |
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| Q |
101 |
tgacatgaaagaatcaaatcgtaagcaccctaatataaaaattctgtcaagcaaggaaaaaataacttaagatggtttcgaagaaattggtagaaggtac |
200 |
Q |
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| T |
13102942 |
tgacatgaaagaatcaaatcgtaagcaccctaatataaaaattctgtcaagcaaggaaaaaataacttaagatggtttcgaagaaattggtagaaggtac |
13103041 |
T |
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| Q |
201 |
atacaataggaacaacaggatacaatctcaatgtctct |
238 |
Q |
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| T |
13103042 |
atacaataggaacaacaggatacaatctcaatgtctct |
13103079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 13095512 - 13095622
Alignment:
| Q |
1 |
tcaggaagaatatcaggtgcatctgcagttcttccatccttgaaaaataatatcataccaaacacacaataatgtcaacaaaatctagcagagattacaa |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
13095512 |
tcaggaagaatatcaggtgcatccgcagttcttccatccttgaaaaatagtatcataccaaagacacaagaatgtcaacaaaatctagcagagattacaa |
13095611 |
T |
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| Q |
101 |
tgacatgaaag |
111 |
Q |
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| T |
13095612 |
tgacatgaaag |
13095622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 13113973 - 13114053
Alignment:
| Q |
158 |
aaaaataacttaagatggtttcgaagaaattggtagaaggtacatacaataggaacaacaggatacaatctcaatgtctct |
238 |
Q |
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| T |
13113973 |
aaaaataattcaagatggttttgaagaaattggtagaaggtacatacaacagggagtacagggtacaatctcaatgtctct |
13114053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 13113687 - 13113769
Alignment:
| Q |
4 |
ggaagaatatcaggtgcatctgcagttcttccatccttgaaaaataatatcataccaaacacacaataatgtcaacaaaatcta |
87 |
Q |
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| T |
13113687 |
ggaagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcataac-aagacacaaaaatatcatcaaaatcta |
13113769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 18670935 - 18670853
Alignment:
| Q |
4 |
ggaagaatatcaggtgcatctgcagttcttccatccttgaaaaataatatcataccaaacacacaataatgtcaacaaaatcta |
87 |
Q |
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||||||| ||| || ||||| ||||||||||||||||||||||||| ||||||| | || |||||| ||| ||| ||||||||| |
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| T |
18670935 |
ggaagaacatccggcgcatcagcagttcttccatccttgaaaaatagtatcataac-aagacacaaaaatatcatcaaaatcta |
18670853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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