View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_high_66 (Length: 241)
Name: NF3687_high_66
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_high_66 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 47267899 - 47267676
Alignment:
| Q |
1 |
ccttatagttgtaaataaacaccgctccttaataaccataagatctgctacagaatgcatatattcctctgtaacttcagcttttaattttcttaccaac |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47267899 |
ccttatagttgtaaataaacaccgctctttaataaccataagatctgctacagaatgcatatattcctctgtaacttcagcttttaattttcttaccaac |
47267800 |
T |
|
| Q |
101 |
tccacagaataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatccaacaagtggcgaat |
200 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47267799 |
tccacagcataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatccaacaagtggcgaat |
47267700 |
T |
|
| Q |
201 |
tgttagcattaaacctcgaacgtg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
47267699 |
tgttagcattaaacctcgaacgtg |
47267676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 47298956 - 47299179
Alignment:
| Q |
1 |
ccttatagttgtaaataaacaccgctccttaataaccataagatctgctacagaatgcatatattcctctgtaacttcagcttttaattttcttaccaac |
100 |
Q |
| |
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||||| |||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47298956 |
ccttacagttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaac |
47299055 |
T |
|
| Q |
101 |
tccacagaataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatccaacaagtggcgaat |
200 |
Q |
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||||| | |||||| |||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47299056 |
tccactgcataaccaaatgggtttccacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccgtagtatccaacaagtggcgaat |
47299155 |
T |
|
| Q |
201 |
tgttagcattaaacctcgaacgtg |
224 |
Q |
| |
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||||| ||||||||||||| |||| |
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| T |
47299156 |
tgttaacattaaacctcgagcgtg |
47299179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 47292349 - 47292572
Alignment:
| Q |
1 |
ccttatagttgtaaataaacaccgctccttaataaccataagatctgctacagaatgcatatattcctctgtaacttcagcttttaattttcttaccaac |
100 |
Q |
| |
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||||| |||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
47292349 |
ccttacagttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaac |
47292448 |
T |
|
| Q |
101 |
tccacagaataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatccaacaagtggcgaat |
200 |
Q |
| |
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||||| | |||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
47292449 |
tccactgcataaccaaatggatttccacaaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaat |
47292548 |
T |
|
| Q |
201 |
tgttagcattaaacctcgaacgtg |
224 |
Q |
| |
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||||| ||||||||||| |||| |
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|
| T |
47292549 |
tgttaatgttaaacctcgagcgtg |
47292572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 47283857 - 47283641
Alignment:
| Q |
8 |
gttgtaaataaacaccgctccttaataaccataagatctgctacagaatgcatatattcctctgtaacttcagcttttaattttcttaccaactccacag |
107 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| | ||||||||| ||||| |||||||||| ||||||| |||||||| ||| ||||| | |
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|
| T |
47283857 |
gttgtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactg |
47283758 |
T |
|
| Q |
108 |
aataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatccaacaagtggcgaattgttagc |
207 |
Q |
| |
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||||||||| | ||||||||||||||||||||| |||||||| || |||||| |||||||||| ||||| || ||||||||||||||||||| || ||| |
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| T |
47283757 |
cataacctaaagggtttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagc |
47283658 |
T |
|
| Q |
208 |
attaaacctcgaacgtg |
224 |
Q |
| |
|
||||||| ||||||| |
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| T |
47283657 |
cctaaaccttgaacgtg |
47283641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 47279270 - 47279048
Alignment:
| Q |
2 |
cttatagttgtaaataaacaccgctccttaataaccataagatctgctacagaatgcatatattcctctgtaacttcagcttttaattttcttaccaact |
101 |
Q |
| |
|
||||| |||||||||||||| || ||||||||||||||||||||||| | ||||||||| ||||| |||||||||| ||||||| |||||||| ||| | |
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| T |
47279270 |
cttattgttgtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaatt |
47279171 |
T |
|
| Q |
102 |
ccacagaataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatccaacaagtggcgaatt |
201 |
Q |
| |
|
|||| ||||||||| | |||||||||||||||||||| |||||||| || |||||| |||||||||| ||||| || ||||||||||||||||||| |
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|
| T |
47279170 |
ccactccataacctaaaggatttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatg |
47279071 |
T |
|
| Q |
202 |
gttagcattaaacctcgaacgtg |
224 |
Q |
| |
|
|| ||| ||||||| ||||||| |
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| T |
47279070 |
gtcagccctaaaccttgaacgtg |
47279048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 47242989 - 47242805
Alignment:
| Q |
7 |
agttgtaaataaacaccgctccttaataaccataagatctgctacagaatgcatatattcctctgtaacttcagcttttaattttcttaccaactccaca |
106 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| |||||||| ||||||||| |||||||||||||||| || |||| |||||||| ||||||||| |
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|
| T |
47242989 |
agttgtaaataaacatcgttccttaataaccataaaatctgctaaagaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccact |
47242890 |
T |
|
| Q |
107 |
gaataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatccaacaa |
191 |
Q |
| |
|
| |||||||||| |||||||||||||| | ||| |||||||| ||||||| | |||||| ||||||||||| |||||||||| |
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|
| T |
47242889 |
gcataacctaattggtttccacaaagctcctttgcggtggtgacagccgccgagaaagcaatgcaattaccgtaatatccaacaa |
47242805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 47257114 - 47256935
Alignment:
| Q |
9 |
ttgtaaataaacaccgctccttaataaccataagatctgctacagaatgcatatattcctctgtaacttcagcttttaattttcttaccaactccacaga |
108 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||||| | || ||||| || | ||||||||||| ||||||| |||||||| ||||||||| | |
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|
| T |
47257114 |
ttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatgtacttctctgtaacttgagcttttgcttttcttatcaactccactgc |
47257015 |
T |
|
| Q |
109 |
ataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatccaa |
188 |
Q |
| |
|
|||||||||| |||||||||||||| | ||| |||||||| ||||||| | |||||| ||| || || || ||||||| |
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|
| T |
47257014 |
ataacctaattggtttccacaaagctcctttgcggtggtgactgccgccgagaaagcaatacagttgccataatatccaa |
47256935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 32731655 - 32731475
Alignment:
| Q |
8 |
gttgtaaataaacaccgctccttaataaccataagatctgctacagaatgcatatattcctctgtaacttcagcttttaattttcttaccaactccacag |
107 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| |||||||| ||||||||| |||||||||||||||| || |||| |||||||| ||||||||| | |
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|
| T |
32731655 |
gttgtaaataaacatcgttccttaataaccatacaatctgctaaagaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactg |
32731556 |
T |
|
| Q |
108 |
aataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatccaa |
188 |
Q |
| |
|
|||||||||| |||||||||||||| | ||| |||||||| ||||||| | |||||| |||||||||||| ||||||| |
|
|
| T |
32731555 |
cataacctaattggtttccacaaagctcctttgcggtggtgacagccgccgagaaagcaatacaattaccgtaatatccaa |
32731475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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