View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3687_high_7 (Length: 460)
Name: NF3687_high_7
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_high_7 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 34974797 - 34975237
Alignment:
| Q |
1 |
atggttgtataaatatcatttctcaataattactatcaacttgctcaaaatattatttacctaggactaagggaaactccgtcttccactgactgcatag |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34974797 |
atggttgtataaatatcatttctcgataattattatcaacttgctcaaaatattatttacctaagactaagggaaactccgtcttccagtgactgcatag |
34974896 |
T |
|
| Q |
101 |
attgcactaaacaagtctcagttatgagtaactttaatcttcatctcacagaataacaaaaaatctcacaatggcagaaatagcagtgtcttttgctatt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34974897 |
attgcactaaactagtctcagttatgagtaactttaatct-catctcacagaataacaaaaaatatcacaatggcagaaatagcagtgtcttttgctatt |
34974995 |
T |
|
| Q |
201 |
aaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34974996 |
gaccaactgcttccattgttaacagcaaaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagcct |
34975095 |
T |
|
| Q |
301 |
tcctcaaagatgctgatagaagagctgcagcagaagaagacaacactactgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtat |
400 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34975096 |
tcctcaaagattctgatagaagagctgcagctgaaggagacaacactactgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttctcat |
34975195 |
T |
|
| Q |
401 |
agaagatgtcattgatgattatatgatccatgtagggcagca |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975196 |
agaagatgtcattgatgattatatgatccatgtagggcagca |
34975237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 99 - 444
Target Start/End: Original strand, 34988608 - 34988954
Alignment:
| Q |
99 |
agattgcactaaacaagtctcagttatgagtaactt-taatcttcatctcacagaataacaaaaaatctcacaatggcagaaatagcagtgtcttttgct |
197 |
Q |
| |
|
||||||||| |||||||||||| ||| |||||| || || ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
34988608 |
agattgcaccaaacaagtctcaattacgagtaaattgtagtcttcgtctcatagaataacaaaaaatcttacaatggcagaaatggcagtgtcttttgct |
34988707 |
T |
|
| Q |
198 |
attaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaag |
297 |
Q |
| |
|
||||| |||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
34988708 |
attaagcaactgcttccattgttaacggaagaaaccaaactactgaaaggtgttcacaaagaatttgcagacattaaatatgaactggaaagcatccaaa |
34988807 |
T |
|
| Q |
298 |
ccttcctcaaagatgctgatagaagagctgcagcagaagaagacaacactactgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcg |
397 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34988808 |
ccttccttgaagatgctgatagaagagctgcagctgaaggagacaacactactgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcg |
34988907 |
T |
|
| Q |
398 |
tatagaagatgtcattgatgattatatgatccatgtagggcagcaac |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34988908 |
tatagaagatgtcattgatgattatatgatccatgtagggcagcaac |
34988954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 44 - 444
Target Start/End: Original strand, 34979508 - 34979897
Alignment:
| Q |
44 |
ctcaaaatattatttacctaggactaagggaaactccgtcttccactgactgcatagattgcactaaacaagtctcagttatgagtaactttaatcttca |
143 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| |||||||| | || ||| ||||||||||| |||||| || | || ||||| |
|
|
| T |
34979508 |
ctcaaaatattatttaacaaggactaagggaaactcagtcttccattaaccgcaaagattgcactacacaagta------------aattgtagtcttct |
34979595 |
T |
|
| Q |
144 |
tctcacagaataacaaaaaatctcacaa-tggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactg |
242 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
34979596 |
tctcacagaatatcaaaaattctcacaaatggcagaaaaggcagtgtcttttgctattgaccaactgcttccattgttaacataagaaaccaaactacta |
34979695 |
T |
|
| Q |
243 |
aaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcagaagaagaca |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
34979696 |
aaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattgaagccttccttaaagatgctgatagaagagctgcagctgaaggagaca |
34979795 |
T |
|
| Q |
343 |
acactactgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagca |
442 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34979796 |
acactactgaaggagccaagatgtgggtgaagcaggttacggaagtagcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagca |
34979895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 37 - 444
Target Start/End: Complemental strand, 22658239 - 22657810
Alignment:
| Q |
37 |
caacttgctcaaaatattatttacctaggactaagggaaactccgtcttccactgactgcatagattgcactaaacaagtctcagttatgagtaactt-t |
135 |
Q |
| |
|
|||||||||||||| ||||| || | ||||| |||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||| |||||| || | |
|
|
| T |
22658239 |
caacttgctcaaaaaattatgtaacaaggacatagggaaactcagtcttccactaactacatagattgcactaaacaagtctcaattaggagtaaattgt |
22658140 |
T |
|
| Q |
136 |
aatcttcatctcaca--------------------gaataacaaaaaa-tctcacaatggcagaaatagcagtgtcttttgctattaaccaactgcttcc |
214 |
Q |
| |
|
| ||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
22658139 |
agtcttcatctcacacaagcagtcttcatctcatagaataacaaaaaaatctcataatggcagaaatagcggtgtcttttgctattgaccaattgcttcc |
22658040 |
T |
|
| Q |
215 |
attgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgct |
314 |
Q |
| |
|
| ||||||||| ||||| ||| | || |||||||||||||| ||||| |||| |||||| ||||||| || || || | ||||||||| || || ||| |
|
|
| T |
22658039 |
actgttaacaggagaaatcaatctgctcaaaggtgttcacaagaaattttcagatattaaagatgaactggagagtatccgagccttccttaaggacgct |
22657940 |
T |
|
| Q |
315 |
gatagaagagctgcagcagaagaagacaacactactgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattg |
414 |
Q |
| |
|
|| ||||||||| |||| || | |||| ||| | ||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| |
|
|
| T |
22657939 |
gacagaagagctacagctgagggagacggcacaagtgaaggagccaaaatgtgggtgaagcaggttagggaaatagcttttcgcatagaagatgtcattg |
22657840 |
T |
|
| Q |
415 |
atgattatatgatccatgtagggcagcaac |
444 |
Q |
| |
|
||||||||||||||||||| |||||||||| |
|
|
| T |
22657839 |
atgattatatgatccatgtggggcagcaac |
22657810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 171 - 433
Target Start/End: Original strand, 22178872 - 22179134
Alignment:
| Q |
171 |
atggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagaca |
270 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| |||| ||| | || |||||||||| ||| ||||||| ||| | |
|
|
| T |
22178872 |
atggcagaaatggcagtttcttttgctattgaccaactgcttccattgttaacacaagaagtcaatcttctcaaaggtgttcccaaggaatttgaagata |
22178971 |
T |
|
| Q |
271 |
ttaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcagaagaagacaacactactgaaggagccaaaatgtgggt |
370 |
Q |
| |
|
||||| ||||| | |||||||| |||||||||||||||||||||||||||||||||||||| || | ||||||||||| |||||||| ||||| ||||| |
|
|
| T |
22178972 |
ttaaagatgaatttgaaagcatccaagccttcctcaaagatgctgatagaagagctgcagctgatggagacaacactagtgaaggagtcaaaacatgggt |
22179071 |
T |
|
| Q |
371 |
gaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgt |
433 |
Q |
| |
|
|||||| |||||| || |||||||| ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
22179072 |
gaagcaacttagggtagcagcttttcgcatagaagatatcattgatgattatttgatccatgt |
22179134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 170 - 436
Target Start/End: Original strand, 21936607 - 21936873
Alignment:
| Q |
170 |
aatggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagac |
269 |
Q |
| |
|
|||||||||||| || ||||||||||||||| ||||||| ||||| ||||| |||| |||| ||| | || |||||||||||||| ||||||| |||| |
|
|
| T |
21936607 |
aatggcagaaatggctgtgtcttttgctattgaccaacttcttccgttgttgacagaagaagtcaatcttctcaaaggtgttcacaaggaatttggagac |
21936706 |
T |
|
| Q |
270 |
attaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcagaagaagacaacactactgaaggagccaaaatgtggg |
369 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| || | ||| |||| || |||||||| |||| |||| |
|
|
| T |
21936707 |
attaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcagctgatggagagaacaatagtgaaggagttaaaacttggg |
21936806 |
T |
|
| Q |
370 |
tgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagg |
436 |
Q |
| |
|
|||||||| ||||||||| |||||| | ||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
21936807 |
tgaagcagcttagggaagcagctttttgcatagaagatatcattgatgaatatatgatccatgtagg |
21936873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 249 - 442
Target Start/End: Original strand, 22104256 - 22104449
Alignment:
| Q |
249 |
gttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcagaagaagacaacacta |
348 |
Q |
| |
|
|||||||| |||||||||||| ||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || | |||||||||| |
|
|
| T |
22104256 |
gttcacaaggaatttgcagaccttaaagatgaacttgaaagcatccaagccttcctcaaagatgctgatagaagagctgcagctgatggggacaacacta |
22104355 |
T |
|
| Q |
349 |
ctgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagca |
442 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||| || |||||||| ||||||||| |||||||||| ||||||||||||||||| ||||| |
|
|
| T |
22104356 |
gtgaaggagtcaaaacatgggtgaagcaacttagggtagcagcttttcgcatagaagatatcattgatgagtatatgatccatgtaggacagca |
22104449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 170 - 433
Target Start/End: Complemental strand, 22621932 - 22621669
Alignment:
| Q |
170 |
aatggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagac |
269 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||| | ||||||||||||| | |||| ||| || || || || |||||||||||||||||||| |
|
|
| T |
22621932 |
aatggcagaaattgcagtgtcttttgcagttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagac |
22621833 |
T |
|
| Q |
270 |
attaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcagaagaagacaacactactgaaggagccaaaatgtggg |
369 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||||||| |||||||| ||||||| |||||||| ||||| |||| |
|
|
| T |
22621832 |
attaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaagaagataacactagtgaaggagtcaaaacatggg |
22621733 |
T |
|
| Q |
370 |
tgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgt |
433 |
Q |
| |
|
|||| || ||||| ||| | ||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
22621732 |
tgaaacaagttagagaaacaacctttcgcatagaagacatcattgatgattatatgatccatgt |
22621669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 170 - 433
Target Start/End: Complemental strand, 30990290 - 30990042
Alignment:
| Q |
170 |
aatggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagac |
269 |
Q |
| |
|
|||||||||||| ||||||||||| | |||| | ||||| |||||| |||||| | |||| |||| | || | |||||||||||| |||||| |||| |
|
|
| T |
30990290 |
aatggcagaaattgcagtgtctttagttattgatcaactacttccactgttaagggaagaagccaatctgctaagaggtgttcacaaggaattttcagat |
30990191 |
T |
|
| Q |
270 |
attaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcagaagaagacaacactactgaaggagccaaaatgtggg |
369 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| || ||||||||||||| |||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
30990190 |
attaaagatgaacttgaaagcattcaagcctttcttaaagatgctgataaaagagctgcagcag---------------ctgaaggagtcaaaacatggg |
30990106 |
T |
|
| Q |
370 |
tgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgt |
433 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
30990105 |
tgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgt |
30990042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 171 - 444
Target Start/End: Original strand, 22113844 - 22114120
Alignment:
| Q |
171 |
atggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagaca |
270 |
Q |
| |
|
||||||||||| | |||||||| | | || ||||||| |||||| |||||| | |||| |||| | ||| ||| |||||||| || || ||||| | |
|
|
| T |
22113844 |
atggcagaaatgtcggtgtctttagttgttgaccaactacttccactgttaagggaagaagccaagctgttgagaggcgttcacaaggagttcgcagaga |
22113943 |
T |
|
| Q |
271 |
ttaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcag---aagaagacaacactactgaaggagccaaaatgtg |
367 |
Q |
| |
|
||||| ||||||| |||||||||||||| ||||| || |||||||||| |||||| |||| || ||||||||||||| | |||||||| |||||| || |
|
|
| T |
22113944 |
ttaaagatgaactggaaagcattcaagcattcctgaaggatgctgataaaagagcagcaggagctgaagaagacaacaccagtgaaggagtcaaaatatg |
22114043 |
T |
|
| Q |
368 |
ggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagcaac |
444 |
Q |
| |
|
||||||||| ||||||| | ||||||| ||||||||| |||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
22114044 |
ggtgaagcaacttagggaggcagcttttcacatagaagatatcattgatgattatttgatccaggtaggacagcaac |
22114120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 189 - 442
Target Start/End: Complemental strand, 18967966 - 18967713
Alignment:
| Q |
189 |
tcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaa |
288 |
Q |
| |
|
|||||||| ||| ||||||| |||||||| ||||||| |||| || | || |||| ||||||||| ||||||| |||||||||| ||||||| |||| |
|
|
| T |
18967966 |
tcttttgcgattgaccaacttcttccattattaacagaagaagtcagtctgctcaaagatgttcacaacgaatttgaagacattaaagatgaacttgaaa |
18967867 |
T |
|
| Q |
289 |
gcattcaagccttcctcaaagatgctgatagaagagctgcagcagaagaagacaacactactgaaggagccaaaatgtgggtgaagcaggttagggaagt |
388 |
Q |
| |
|
| || |||||||| || | |||||||||| |||||||| ||| |||| ||||||||||| ||||||| ||||| ||| |||||||||||||| ||| |
|
|
| T |
18967866 |
gtatccaagcctttcttcaggatgctgataaaagagctgtagctgaaggagacaacactagcgaaggagtgaaaatatggttgaagcaggttaggaaagc |
18967767 |
T |
|
| Q |
389 |
ggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagca |
442 |
Q |
| |
|
||||||| |||||| | || ||||||||||| ||||||||||||| ||||| |
|
|
| T |
18967766 |
atcttttcgcatagaaaacatcgttgatgattatgtgatccatgtaggccagca |
18967713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 171 - 444
Target Start/End: Original strand, 22033981 - 22034257
Alignment:
| Q |
171 |
atggcagaaatagcagtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagaca |
270 |
Q |
| |
|
||||| ||||| || |||||||| | | || ||||||| |||||| ||||||| | |||| |||| | ||| ||| |||||||| || || ||||| | |
|
|
| T |
22033981 |
atggcggaaatggcggtgtctttagttgttgaccaactacttccactgttaacggaagaagccaagctgttgagaggcgttcacaaggagttcgcagaga |
22034080 |
T |
|
| Q |
271 |
ttaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgc---agcagaagaagacaacactactgaaggagccaaaatgtg |
367 |
Q |
| |
|
||||| ||||||| |||||||||||||| ||||| || |||||||||| |||||| || ||| |||| ||||||||| |||||||| |||||| || |
|
|
| T |
22034081 |
ttaaagatgaactggaaagcattcaagcattcctgaaggatgctgataaaagagcagcaggagctgaaggagacaacaccggtgaaggagtcaaaatatg |
22034180 |
T |
|
| Q |
368 |
ggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagcaac |
444 |
Q |
| |
|
||||||||| ||||||| | |||||||| ||||||||| |||||||||||||| ||||||| |||| ||||||| |
|
|
| T |
22034181 |
ggtgaagcaacttagggaggcagcttttcgcatagaagatatcattgatgattatttgatccagttaggacagcaac |
22034257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 430
Target Start/End: Original strand, 22010301 - 22010548
Alignment:
| Q |
186 |
gtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcg |
285 |
Q |
| |
|
|||||||| | |||| ||||||| |||||| |||||| | ||||||||| | ||| ||| ||||||| || |||||| |||||||| |||||| | |
|
|
| T |
22010301 |
gtgtctttagttattgaccaactacttccagtgttaagggaagaaaccaagctgttgagaggcattcacaaggagtttgcaaacattaaagctgaactgg |
22010400 |
T |
|
| Q |
286 |
aaagcattcaagccttcctcaaagatgctgatagaagagctgcagcag---aagaagacaacactactgaaggagccaaaatgtgggtgaagcaggttag |
382 |
Q |
| |
|
||||||||||||| ||||| || |||||||||| |||||| |||| || ||| ||||||| | | |||||||| |||||| ||||||||||| |||| |
|
|
| T |
22010401 |
aaagcattcaagcattcctgaaggatgctgataaaagagcagcaggagctgaaggagacaactcaagtgaaggagtcaaaatatgggtgaagcaacttag |
22010500 |
T |
|
| Q |
383 |
ggaagtggcttttcgtatagaagatgtcattgatgattatatgatcca |
430 |
Q |
| |
|
||||| ||||||| ||||||||| |||||||||||||| ||||||| |
|
|
| T |
22010501 |
ggaagcagcttttcacatagaagatatcattgatgattatttgatcca |
22010548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 430
Target Start/End: Original strand, 22186467 - 22186714
Alignment:
| Q |
186 |
gtgtcttttgctattaaccaactgcttccattgttaacagcagaaaccaaattactgaaaggtgttcacaaagaatttgcagacattaaatatgaactcg |
285 |
Q |
| |
|
|||||||| | |||| ||||||| |||||| |||||| | ||||||||| | ||| ||| ||||||| || |||||| |||||||| |||||| | |
|
|
| T |
22186467 |
gtgtctttagttattgaccaactacttccagtgttaagggaagaaaccaagctgttgagaggcattcacaaggattttgcaaacattaaagctgaactgg |
22186566 |
T |
|
| Q |
286 |
aaagcattcaagccttcctcaaagatgctgatagaagagctgcagcag---aagaagacaacactactgaaggagccaaaatgtgggtgaagcaggttag |
382 |
Q |
| |
|
||||||||||||| ||||| || |||||||||| |||||| |||| || ||| ||||||| | | |||||||| |||||| ||||||||||| |||| |
|
|
| T |
22186567 |
aaagcattcaagcattcctgaaggatgctgataaaagagcagcaggagctgaaggagacaactcaagtgaaggagtcaaaatatgggtgaagcaacttag |
22186666 |
T |
|
| Q |
383 |
ggaagtggcttttcgtatagaagatgtcattgatgattatatgatcca |
430 |
Q |
| |
|
||||| ||||||| ||||||||| |||||||||||||| ||||||| |
|
|
| T |
22186667 |
ggaagcagcttttcacatagaagatatcattgatgattatttgatcca |
22186714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 241 - 428
Target Start/End: Complemental strand, 22649106 - 22648918
Alignment:
| Q |
241 |
tgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcagaagaaga |
340 |
Q |
| |
|
||||||| ||||||| ||||||||| |||||||| ||||||| || | ||| ||||||| ||| || |||||||||||||||||||| || |||||||| |
|
|
| T |
22649106 |
tgaaaggcattcacaacgaatttgcaaacattaaagatgaactggagatcatccaagcctcccttaaggatgctgatagaagagctgccgctgaagaaga |
22649007 |
T |
|
| Q |
341 |
caacactactgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatag-aagatgtcattgatgattatatgatc |
428 |
Q |
| |
|
|| || || |||||||| |||| |||||||||||| |||| |||| ||||| || |||| ||||| |||||||||||||||||||| |
|
|
| T |
22649006 |
cagcaataatgaaggagtcaaatcgtgggtgaagcaacttagagaagcagctttccgcatagaaagatatcattgatgattatatgatc |
22648918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 436
Target Start/End: Original strand, 21945181 - 21945356
Alignment:
| Q |
264 |
gcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag---cagaagaagacaacactactgaaggagcca |
360 |
Q |
| |
|
||||| |||||| ||||||| |||||||||||||| |||||||| |||||||||| |||||| |||| | |||| ||||| ||| | |||| ||| || |
|
|
| T |
21945181 |
gcagagattaaagatgaacttgaaagcattcaagcattcctcaaggatgctgataaaagagcagcaggaactgaaggagacaccaccagtgaaagagtca |
21945280 |
T |
|
| Q |
361 |
aaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagg |
436 |
Q |
| |
|
|||| ||||||||||| |||||| | |||||||| ||||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
21945281 |
aaatatgggtgaagcaacttagggtggcagcttttcgcatagaagatatcattgatgattatttgatccaggtagg |
21945356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 252 - 428
Target Start/End: Complemental strand, 22616177 - 22616001
Alignment:
| Q |
252 |
cacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcagcagaagaagacaacactactg |
351 |
Q |
| |
|
||||| ||||||||| |||| ||| ||||||| |||||||| ||||| ||||| || || || || | ||||||||||| |||| ||||||| || |
|
|
| T |
22616177 |
cacaaggaatttgcatacatcaaagatgaacttgaaagcatccaagcattccttaaggacgccgaaaaaagagctgcagttgaaggagacaacgtccgtg |
22616078 |
T |
|
| Q |
352 |
aaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatc |
428 |
Q |
| |
|
|||| | |||||| |||||||||||||| | | ||| |||||||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
22616077 |
aaggggtcaaaatatgggtgaagcaggtgataggagtagcttttcgtatagaagatatcatagatgaatatatgatc |
22616001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 330
Target Start/End: Original strand, 2806817 - 2806904
Alignment:
| Q |
243 |
aaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag |
330 |
Q |
| |
|
|||||||| |||| ||||||| ||||||| ||| ||||||| || |||||||||| ||||||||||||||| ||||||||||| |||| |
|
|
| T |
2806817 |
aaaggtgtacacacagaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcag |
2806904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 436
Target Start/End: Original strand, 22052368 - 22052466
Alignment:
| Q |
338 |
agacaacactactgaaggagccaaaatgtgggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagg |
436 |
Q |
| |
|
||||||||| | |||||||| |||||| ||||||||||| ||||||| | |||||||| ||||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
22052368 |
agacaacaccaatgaaggagtcaaaatatgggtgaagcaacttagggaggcagcttttcgcatagaagatatcattgatgattatttgatccaggtagg |
22052466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 330
Target Start/End: Original strand, 2789917 - 2790001
Alignment:
| Q |
246 |
ggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag |
330 |
Q |
| |
|
||||| |||||||| ||| |||||| ||| ||||||| || |||||||||| ||||||||||||||| |||| ||||||||||| |
|
|
| T |
2789917 |
ggtgtgcacaaagattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcag |
2790001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 322
Target Start/End: Original strand, 2818110 - 2818192
Alignment:
| Q |
240 |
ctgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaag |
322 |
Q |
| |
|
|||| |||||| |||| ||| ||| ||||||| ||| ||||||| |||||||| |||| ||||||||||||||| |||||||| |
|
|
| T |
2818110 |
ctgagaggtgtacacagagatttttcagacatcaaagatgaactagaaagcatccaagtcttcctcaaagatgcagatagaag |
2818192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 2796921 - 2797004
Alignment:
| Q |
247 |
gtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag |
330 |
Q |
| |
|
|||| |||||||| ||| ||||||| | | ||||||| || |||||||||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
2796921 |
gtgtgcacaaagatttttcagacatcacagatgaacttgagagcattcaagttttcctcaaagatgcagatacaagagctgcag |
2797004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 328
Target Start/End: Original strand, 2768628 - 2768710
Alignment:
| Q |
246 |
ggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgc |
328 |
Q |
| |
|
||||| |||| ||| ||| ||||||| ||| ||||||| || |||||||||| ||||||||||||||| || ||||| ||||| |
|
|
| T |
2768628 |
ggtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgc |
2768710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 247 - 328
Target Start/End: Original strand, 2748558 - 2748639
Alignment:
| Q |
247 |
gtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgc |
328 |
Q |
| |
|
|||| |||| ||| ||| ||||||| ||| ||||||| || |||||||||| ||||||||||||||| || ||||| ||||| |
|
|
| T |
2748558 |
gtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgc |
2748639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 322
Target Start/End: Original strand, 2758772 - 2758849
Alignment:
| Q |
245 |
aggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaag |
322 |
Q |
| |
|
|||||| |||||||| || |||||| ||| ||||||| |||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
2758772 |
aggtgtacacaaagatttcttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaag |
2758849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 2856390 - 2856322
Alignment:
| Q |
245 |
aggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgc |
313 |
Q |
| |
|
|||||| |||| ||| ||| ||||||| ||| ||||||| || |||||||||| ||||||||||||||| |
|
|
| T |
2856390 |
aggtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgc |
2856322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 330
Target Start/End: Original strand, 5412485 - 5412550
Alignment:
| Q |
265 |
cagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag |
330 |
Q |
| |
|
||||||| ||| ||||||| |||| ||||||| |||||||||||||||| || | ||| ||||||| |
|
|
| T |
5412485 |
cagacatcaaagatgaactagaaatcattcaatccttcctcaaagatgcagacaaaagggctgcag |
5412550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 22443533 - 22443500
Alignment:
| Q |
391 |
cttttcgtatagaagatgtcattgatgattatat |
424 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
22443533 |
cttttcatatagaagatgtcattgatgattatat |
22443500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 873471 - 873362
Alignment:
| Q |
252 |
cacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgat-agaagagctg---cagcagaagaagacaacact |
347 |
Q |
| |
|
||||| || ||||||||||||||| ||||||| ||||| |||||||| ||||| || ||||||||| | || ||||| |||| |||| |||||||||| |
|
|
| T |
873471 |
cacaaggagtttgcagacattaaagatgaactggaaagtattcaagcattccttaaggatgctgataaaaaaagctgaatcagctgaagcagacaacact |
873372 |
T |
|
| Q |
348 |
actgaaggag |
357 |
Q |
| |
|
| |||||||| |
|
|
| T |
873371 |
agtgaaggag |
873362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 1234748 - 1234639
Alignment:
| Q |
252 |
cacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgat-agaagagctg---cagcagaagaagacaacact |
347 |
Q |
| |
|
||||| || ||||||||||||||| ||||||| ||||| |||||||| ||||| || ||||||||| | || ||||| |||| |||| |||||||||| |
|
|
| T |
1234748 |
cacaaggagtttgcagacattaaagatgaactggaaagtattcaagcattccttaaggatgctgataaaaaaagctgaatcagctgaagcagacaacact |
1234649 |
T |
|
| Q |
348 |
actgaaggag |
357 |
Q |
| |
|
| |||||||| |
|
|
| T |
1234648 |
agtgaaggag |
1234639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 330
Target Start/End: Complemental strand, 6737 - 6647
Alignment:
| Q |
240 |
ctgaaaggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagatgctgatagaagagctgcag |
330 |
Q |
| |
|
|||| |||||| |||| ||| ||| ||||||| ||| ||||||| |||||||||||| ||||||||||||||| || |||| ||||||| |
|
|
| T |
6737 |
ctgagaggtgtacacacagattttacagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagacagaaaggctgcag |
6647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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