View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3687_high_70 (Length: 237)
Name: NF3687_high_70
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_high_70 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27122313 - 27122093
Alignment:
| Q |
1 |
tcaaacattaaaatttagtttcatttcaataatggaaaaataaacttatttttggcaatatcttttttagaataaatttgttatttaatttggttagtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27122313 |
tcaaacattaaaatttagtttcatttcaataatggaaaaataaacttatttttggcaatatcttttttagaataaatttgttatttaatttggttagtga |
27122214 |
T |
|
| Q |
101 |
cagatgaggtgtgctaattagaggaggttgggatagtacaatttatctaaatgtatcgtcatatcattggattaaaactattttgaatccagctctttta |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| || |||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
27122213 |
cagatgaggtgtgctaattaaaggaggttgggatagtacaagttatctaaatgcatcatc--atcattggattaaaacgattttgaatctagctctttta |
27122116 |
T |
|
| Q |
201 |
gttttgaaaattttgtccccttt |
223 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
27122115 |
gtttggaaaattttgtccccttt |
27122093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University