View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_high_73 (Length: 236)
Name: NF3687_high_73
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_high_73 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 37947913 - 37948118
Alignment:
| Q |
17 |
atgaagtacaatactcaacatgctttattgtcgtgaaggatactgtttttcctttgtccaaataaagaatcgtggacacatcacacatgcattcattaaa |
116 |
Q |
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| T |
37947913 |
atgaagtacaatactcaacatgctttattgtcgtgaaggatactgtttttcctttgtccaaataaagaatcgtggacacatcacacatgcattcattaaa |
37948012 |
T |
|
| Q |
117 |
tgctaaaacttgaatatttccacaagaaaaacgagtctacagagaaaaggaacaaattactggtttaaagtagacaagtttggtatttgactcctttgac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37948013 |
tgctaaaacttgaatatttccacaagaaaaacgagtctacagagaaaaggaacaaattactggtttaaagtagacaagtttggtatttgactcctttgac |
37948112 |
T |
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| Q |
217 |
cctatg |
222 |
Q |
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||||| |
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| T |
37948113 |
tctatg |
37948118 |
T |
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