View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3687_high_74 (Length: 236)
Name: NF3687_high_74
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_high_74 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 15517487 - 15517686
Alignment:
| Q |
18 |
atgaacgcagatgcatctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgtcatcgataccacctggtaaagtaacgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
15517487 |
atgaacgcagatgcatctgatattgcaaaccccaaaaatgatggtttcttcaaaaagtttggttttcctgtgttatcgataccacctggtaaagtaactg |
15517586 |
T |
|
| Q |
118 |
cagcagcgaacactccggttgcaatgactgttgaaattagcatacacgactccgcagnnnnnnncatccaagactctgcatctttccttagtttttcatg |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15517587 |
cagcagcgaacactccggtagcaatgactgttgaaattagcatacacgactccgcagtttttttcatccaagactctgcatcttcccttagtttttcatg |
15517686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 33 - 217
Target Start/End: Original strand, 15493676 - 15493860
Alignment:
| Q |
33 |
tctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgtcatcgataccacctggtaaagtaacggcagcagcgaacactc |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
15493676 |
tctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttgcagcagcgaacactc |
15493775 |
T |
|
| Q |
133 |
cggttgcaatgactgttgaaattagcatacacgactccgcagnnnnnnncatccaagactctgcatctttccttagtttttcatg |
217 |
Q |
| |
|
| || |||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15493776 |
cagtagcaatgactgttgaaattagcatacaagactcggcagtttttttcatccaagactctgcatcttcccttagtttttcatg |
15493860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 15534000 - 15534199
Alignment:
| Q |
18 |
atgaacgcagatgcatctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgtcatcgataccacctggtaaagtaacgg |
117 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||||| |||| || |||| |||| ||||||||||||| ||||||||| ||||||||||||||||||| | |
|
|
| T |
15534000 |
atgaatgcagatgcatctgatgttgcaaataccaagaatggtgttttcgtcaactagtttggttttccggtgtcatcggtaccacctggtaaagtaactg |
15534099 |
T |
|
| Q |
118 |
cagcagcgaacactccggttgcaatgactgttgaaattagcatacacgactccgcagnnnnnnncatccaagactctgcatctttccttagtttttcatg |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||| | |||||||||| |||| |
|
|
| T |
15534100 |
cagcagcgaacactccggtagcaatgactgttgaaattagcatacatgactccgcagtttttttcatccaagactctgcatcctcccttagttttgcatg |
15534199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 15654449 - 15654652
Alignment:
| Q |
14 |
tgagatgaacgcagatgcatctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgtcatcgataccacctggtaaagta |
113 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||||||| | ||||||| |||| |||||||||||| |
|
|
| T |
15654449 |
tgagatgaatgcagatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagagtcatcggtaccgcctggtaaagta |
15654548 |
T |
|
| Q |
114 |
acggcagcagcgaacactccggttgcaatgactgttgaaattagcatacacgactccgcagnnnnnnncatccaagactctgcatctttccttagttttt |
213 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||||||||||| || ||||| |||| |||||| |||||||||| || |||||| ||| |
|
|
| T |
15654549 |
gttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggcagtttttttcatccacgactctgcattttctcttagtgttt |
15654648 |
T |
|
| Q |
214 |
catg |
217 |
Q |
| |
|
|||| |
|
|
| T |
15654649 |
catg |
15654652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 169
Target Start/End: Original strand, 15645397 - 15645552
Alignment:
| Q |
14 |
tgagatgaacgcagatgcatctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgtcatcgataccacctggtaaagta |
113 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||||||| | ||||||| |||| |||||||||||| |
|
|
| T |
15645397 |
tgagatgaatgcagatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagagtcatcggtaccgcctggtaaagta |
15645496 |
T |
|
| Q |
114 |
acggcagcagcgaacactccggttgcaatgactgttgaaattagcatacacgactc |
169 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||||||||||| || ||||| |
|
|
| T |
15645497 |
gttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactc |
15645552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 43 - 169
Target Start/End: Original strand, 15601209 - 15601335
Alignment:
| Q |
43 |
caaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgtcatcgataccacctggtaaagtaacggcagcagcgaacactccggttgcaat |
142 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| |||| |||||||| ||||||||||| ||||| |
|
|
| T |
15601209 |
caaacaccaaaaatgatggtttcttcaaataatttggttttcctgtgtcatcgataccgcctggtacagtagttgcagcagcaaacactccggtagcaat |
15601308 |
T |
|
| Q |
143 |
gactgttgaaattagcatacacgactc |
169 |
Q |
| |
|
||| | ||||||||||||||| ||||| |
|
|
| T |
15601309 |
gacggctgaaattagcatacaagactc |
15601335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 15624772 - 15624932
Alignment:
| Q |
14 |
tgagatgaacgcagatgcatctgatattgcaaacaccaaaaatgatggtttcttcaaaaagtttggttttcctgtgtcatcgataccacctggtaaagta |
113 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||||||| | |||||| |||| |||||||||||| |
|
|
| T |
15624772 |
tgagatgaatgcaaatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagaatcatcggtaccgcctggtaaagta |
15624871 |
T |
|
| Q |
114 |
acggcagcagcgaacactccggttgcaatgactgttgaaattagcatacacgactccgcag |
174 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||||||||||| || ||||| |||| |
|
|
| T |
15624872 |
gttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggcag |
15624932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University