View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_high_75 (Length: 235)
Name: NF3687_high_75
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_high_75 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 15517069 - 15516835
Alignment:
| Q |
1 |
atgcaacacttacaaatcatatatcactcaatctcccatgtatgatcagcagaatctgattagtcaaatatcctatcattaattgttttttgttaaatta |
100 |
Q |
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| T |
15517069 |
atgcaacacttacaaatcatatatcactcaatctcccatgtatgatcagcagaatctgattagtcaaatatcctatcattaattgttttttgttaaatta |
15516970 |
T |
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| Q |
101 |
aagtggtaatgtattttttgaattgtttctagaagtgttgacgttttattacattatggaataatgtagcttctatatttgttcttccttataagggagc |
200 |
Q |
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| T |
15516969 |
aagtggtaatgtattatttgaattgtttctagaagtgttgacgttttattacattatggaataatgtagcttctatatttgttcttccttataagggagc |
15516870 |
T |
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| Q |
201 |
tttagtctatttaattggtgtgaatatattttaaa |
235 |
Q |
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| T |
15516869 |
tttagtctatttaattggtgtgaatatattttaaa |
15516835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 15533523 - 15533430
Alignment:
| Q |
78 |
attaattgttttttgttaaattaaagtggtaatgtattttttgaattgtttctagaagtgttgacgttttattacattatggaataatgtagct |
171 |
Q |
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| T |
15533523 |
attaattgttttttctaaaattaaagtggtaatgtattatttgaagtgtttctaaaagtgttgatgttagataacattatagaataatgtagct |
15533430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 15533580 - 15533525
Alignment:
| Q |
1 |
atgcaacacttacaaatcatatatcactcaatctcccatgtatgatcagcagaatct |
57 |
Q |
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| T |
15533580 |
atgcaacacttacaaattata-atcactcaatctttcatgtatggtcagcagaatct |
15533525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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