View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_11 (Length: 439)
Name: NF3687_low_11
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 183 - 421
Target Start/End: Complemental strand, 3915721 - 3915483
Alignment:
| Q |
183 |
cagcttacaatgatgctatgctctgaagctgaccaagttctacaggaatcatctcagagagttggttatgggaaagatcactgccacatagaagcaaata |
282 |
Q |
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| T |
3915721 |
cagcttacaatgatgctatgctctgaagctgaccaagttctacaggaatcatctcagagagttggttatgggaaagatcactgccacatagaagcaaata |
3915622 |
T |
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| Q |
283 |
gaataatcaagggaataaaacaaataaactaatacttaaaattttcattagaaaaatatataacttacatttccatgatacttttgagattaccaaactc |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3915621 |
gaataatcaagggaataaaacaaataaactaatacttaaaattttcattagaaaaatatataacttacatttccatgatacttttgagattaccaaactc |
3915522 |
T |
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| Q |
383 |
tgcgggaataggtcctgttaaattgttcttgctcagatt |
421 |
Q |
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| T |
3915521 |
tgcgggaataggtcctgttaaattgtttctgctcagatt |
3915483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 3915892 - 3915797
Alignment:
| Q |
12 |
agcagagagagactaagacaatttacaagcgatgtcacgtccccagttaagtcattgttttcaagtctcctacattttatttcaaaccaagtaaat |
107 |
Q |
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| T |
3915892 |
agcagagagagactaagacaatttacaagtgatgtcacgtccccagttaagtcattgttttcaagtctcctacattttatttcaaaccaagtaaat |
3915797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 34959409 - 34959488
Alignment:
| Q |
12 |
agcagagagagactaagacaatttacaagcgatgtcacgtccccagttaagtcattgttttcaagtctcctacattttat |
91 |
Q |
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||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34959409 |
agcagagagagactacgacagtttacaagcgacgtcacgtccccagttaagtcattgttttcaagtctcctacattttat |
34959488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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