View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3687_low_13 (Length: 425)
Name: NF3687_low_13
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_13 |
 | |
|
| [»] scaffold0073 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 14511214 - 14510803
Alignment:
| Q |
1 |
tttttcttctttctattatgtcatgcattaatcggtcaactacttcaaaactatattggtgcatcattgatgcctcatcccaaattaataatttcgtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14511214 |
tttttcttctttctattatgtcatgcattaatcggtcaactacttcaaaactatattggtgcattattgatgcctcatcccaaattaataatttcgtttg |
14511115 |
T |
|
| Q |
101 |
acgaagtagtttttccccagcctatcttttttcatggttaatgttgtaaactcttcgttctcaataggaatcgtatgtgttgagtctggagttcttccac |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14511114 |
acgaagtagtttttccccggcctatcttttttcatggttaatgttgtgaactcttcattctcaataggaatcgtatgtgttgagtctcgagttcttccac |
14511015 |
T |
|
| Q |
201 |
ttggtaataatagaattgtaactccacgtatctaaaccgcgaatag-nnnnnnnncttcatataaatgtgttcctactaccaccataactatatatgaaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14511014 |
ttggtaataatagaattgtaactccacgtatctaaaccgcgaatagtttttttttcttcatataaatgtgttcctactaccaccataactatatatgaaa |
14510915 |
T |
|
| Q |
300 |
aataaacaacaaacatcacaaagaatatactccatgatcttatcgtatacacccatatgttcattagtctacaccagtaatgtgtctttgtcaattcaac |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14510914 |
aataaacaacaaacatcacaaagaatatactccatgatcttatcgtatacacccatatgttcattagtctacaccagtaatgtgtctttgccaattcaac |
14510815 |
T |
|
| Q |
400 |
cctgtcataatt |
411 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14510814 |
cctgtcataatt |
14510803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 52256061 - 52256139
Alignment:
| Q |
18 |
atgtcatgcattaatcggtcaactacttcaaaactatattggtgcatcattgatgcctcatcccaaattaataatttcg |
96 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| |||| ||| |||||||||||| |||||||||||||| ||||||| |
|
|
| T |
52256061 |
atgtcatgcattgatcggtcaactatttcaaaataatatcggtacatcattgatgcatcatcccaaattaaaaatttcg |
52256139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 24542209 - 24542146
Alignment:
| Q |
35 |
gtcaactacttcaaaactatattggtgcatcattgatgcctcatcccaaattaataatttcgtt |
98 |
Q |
| |
|
||||||||||||||||| |||| |||| |||||||||| ||||||| |||||||||| |||||| |
|
|
| T |
24542209 |
gtcaactacttcaaaacaatatcggtgtatcattgatgtctcatcctaaattaataacttcgtt |
24542146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 221
Target Start/End: Original strand, 25076348 - 25076532
Alignment:
| Q |
39 |
actacttcaaaactatattggtgcatcattgatgcctcatcccaaat-taataatttcgtttgacgaagtagtt-tttccccagcctatcttttttcatg |
136 |
Q |
| |
|
||||||||||||| |||||| | |||| | ||||||||||||||| ||||||||| | |||||||| ||||| |||| || ||||| ||||||||| |
|
|
| T |
25076348 |
actacttcaaaacaatattgatatatcactcgtgcctcatcccaaatataataattttgcttgacgaaatagttctttctaaaggctatcatttttcatg |
25076447 |
T |
|
| Q |
137 |
gttaatgttgtaaactcttcgttctcaataggaatcgtatgtgttgagtctggagttcttccacttggtaataatagaattgtaa |
221 |
Q |
| |
|
|||| |||| ||||||| |||||||||| || ||| | |||||| |||| ||||||||| |||||||||| |||||| |
|
|
| T |
25076448 |
gttagcgttgataactctttaatctcaatagggattgtaagcattgagtgtggaattcttccacccaataataatagagttgtaa |
25076532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 21811123 - 21811194
Alignment:
| Q |
41 |
tacttcaaaactatattggtgcatcattgatgcctcatcccaaa-ttaataatttcgtttgacgaagtagtt |
111 |
Q |
| |
|
|||| |||||| ||||||||||||||||| | |||||| ||||| |||||||| ||| ||||||||| |||| |
|
|
| T |
21811123 |
tactacaaaacaatattggtgcatcattggtacctcataccaaatttaataatatcgcttgacgaagaagtt |
21811194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 7037264 - 7037320
Alignment:
| Q |
31 |
atcggtcaactacttcaaaactatattggtgcatcattgatgcctcatcccaaatta |
87 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||| |||||| ||||||||| |
|
|
| T |
7037264 |
atcggtcaactacctcaaaacaccattggtgcatcattggagcctcaccccaaatta |
7037320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 10968467 - 10968401
Alignment:
| Q |
21 |
tcatgcattaatcggtcaactacttcaaaactatattggtgcatcattgatgcctcatcccaaatta |
87 |
Q |
| |
|
||||||||| ||||||||||| | ||||||| || |||||||||||| |||||||||||||||| |
|
|
| T |
10968467 |
tcatgcattgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaatta |
10968401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 295 - 351
Alignment:
| Q |
31 |
atcggtcaactacttcaaaactatattggtgcatcattgatgcctcatcccaaatta |
87 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||| |||||| ||||||||| |
|
|
| T |
295 |
atcggtcaactacctcaaaacaccattggtgcatcattggagcctcaccccaaatta |
351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University