View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_14 (Length: 424)
Name: NF3687_low_14
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 48 - 416
Target Start/End: Complemental strand, 27898550 - 27898178
Alignment:
| Q |
48 |
gcttcaatgaactattaatgaagttaaaaaacgtgagttgtaattcccttatttttgttgaggaaatgtgnnnnnnnaaggcaggggtaatgtgttattg |
147 |
Q |
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| T |
27898550 |
gcttcaatgaactataaatgaagtaaaaaaacgtgagttgtaattcccttatttttgttgaggaaatgtgtttttttaaggcaggggtaatgggttattg |
27898451 |
T |
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| Q |
148 |
ttcctaatatctggtacatctttgtctttattatcttaaattttcctccaacccagaaatgaag---cataaaaatatcactgacaagaagcacatattt |
244 |
Q |
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| T |
27898450 |
ttcctaatatctggtacatctttgtctttattatcttaaattttcctccaacccagaaatgaagaagcataaaaatatcactgacaagaagcacatattt |
27898351 |
T |
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| Q |
245 |
agcaaagttcaaacatgatttaaaaa-agtgcaaattaaattattaaagccgtacgtacttggaactggcatattcatataatttcccagttgttgagaa |
343 |
Q |
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| T |
27898350 |
agcaaagttcaaacatgattaaaaaatagtgaaaattaaattattaaagccgtacgtacttggaactggcatattcatatagtttcccagttgttgagaa |
27898251 |
T |
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| Q |
344 |
aataacaagaccaacttcagcatcacacaaaatcgaaagctcctcagctttcttgaagatccctcttcatctc |
416 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27898250 |
aataacaagaccaacctcagcatcacacaaaatcgaaagctcctcagctttcttgaagatccctcttcttctc |
27898178 |
T |
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