View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3687_low_15 (Length: 422)

Name: NF3687_low_15
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3687_low_15
NF3687_low_15
[»] chr2 (20 HSPs)
chr2 (158-400)||(1537996-1538236)
chr2 (16-61)||(1537823-1537868)
chr2 (197-398)||(9467612-9467813)
chr2 (299-400)||(44788417-44788518)
chr2 (190-285)||(40897552-40897646)
chr2 (57-102)||(1537894-1537939)
chr2 (358-396)||(1114982-1115020)
chr2 (358-396)||(13615907-13615945)
chr2 (358-395)||(11764971-11765008)
chr2 (358-395)||(16194429-16194466)
chr2 (358-395)||(26860606-26860643)
chr2 (358-395)||(31392723-31392760)
chr2 (358-395)||(34983453-34983490)
chr2 (358-395)||(36436126-36436163)
chr2 (358-395)||(38763891-38763928)
chr2 (358-395)||(42016680-42016717)
chr2 (358-395)||(44545673-44545710)
chr2 (359-395)||(29141875-29141911)
chr2 (359-395)||(31643555-31643591)
chr2 (299-394)||(40897658-40897754)
[»] chr6 (12 HSPs)
chr6 (195-400)||(2044929-2045133)
chr6 (197-395)||(2399195-2399399)
chr6 (189-285)||(18235089-18235185)
chr6 (354-400)||(18234972-18235018)
chr6 (200-275)||(13405256-13405331)
chr6 (358-395)||(2660782-2660819)
chr6 (358-395)||(7021995-7022032)
chr6 (358-395)||(15469267-15469304)
chr6 (358-395)||(26468626-26468663)
chr6 (359-395)||(12698559-12698595)
chr6 (359-395)||(12996576-12996612)
chr6 (359-391)||(13405307-13405339)
[»] chr7 (15 HSPs)
chr7 (190-400)||(25303775-25303990)
chr7 (358-395)||(17167044-17167081)
chr7 (358-395)||(22723720-22723757)
chr7 (358-395)||(23469340-23469377)
chr7 (358-395)||(29075129-29075166)
chr7 (358-395)||(31065567-31065604)
chr7 (358-395)||(36675431-36675468)
chr7 (358-395)||(40055768-40055805)
chr7 (358-395)||(44142938-44142975)
chr7 (358-395)||(44467965-44468002)
chr7 (358-395)||(44724007-44724044)
chr7 (358-395)||(45350228-45350265)
chr7 (358-395)||(46027857-46027894)
chr7 (359-395)||(23469227-23469263)
chr7 (359-395)||(25174325-25174361)
[»] chr8 (15 HSPs)
chr8 (189-395)||(26149321-26149525)
chr8 (359-395)||(8996525-8996561)
chr8 (358-395)||(3886725-3886762)
chr8 (358-395)||(5590118-5590155)
chr8 (358-395)||(7012515-7012552)
chr8 (358-395)||(22658291-22658328)
chr8 (226-275)||(33180498-33180547)
chr8 (358-395)||(36060535-36060572)
chr8 (358-395)||(42556038-42556075)
chr8 (358-395)||(43117527-43117564)
chr8 (358-394)||(197268-197304)
chr8 (358-394)||(312105-312141)
chr8 (359-395)||(7413323-7413359)
chr8 (358-394)||(38567308-38567344)
chr8 (359-395)||(43117413-43117449)
[»] chr4 (20 HSPs)
chr4 (299-400)||(11975722-11975823)
chr4 (299-400)||(9024153-9024254)
chr4 (309-400)||(32151117-32151208)
chr4 (301-400)||(50376278-50376376)
chr4 (189-275)||(32151250-32151335)
chr4 (358-395)||(10096400-10096437)
chr4 (358-395)||(12700512-12700549)
chr4 (358-395)||(13233407-13233444)
chr4 (358-395)||(22647288-22647325)
chr4 (358-395)||(31581694-31581731)
chr4 (358-395)||(36584600-36584637)
chr4 (358-395)||(36954954-36954991)
chr4 (358-395)||(41832554-41832591)
chr4 (358-395)||(44134670-44134707)
chr4 (358-395)||(44817494-44817531)
chr4 (359-395)||(7776947-7776983)
chr4 (359-395)||(13857790-13857826)
chr4 (359-395)||(13869320-13869356)
chr4 (348-400)||(15632191-15632243)
chr4 (358-394)||(50767099-50767135)
[»] chr1 (17 HSPs)
chr1 (298-400)||(45807071-45807173)
chr1 (308-400)||(17879864-17879959)
chr1 (197-285)||(45807195-45807283)
chr1 (200-273)||(1243510-1243583)
chr1 (347-400)||(1243661-1243714)
chr1 (358-396)||(45837020-45837058)
chr1 (358-395)||(919653-919690)
chr1 (358-395)||(8086407-8086444)
chr1 (202-275)||(17879751-17879824)
chr1 (358-395)||(24790612-24790649)
chr1 (358-395)||(25299031-25299068)
chr1 (358-395)||(29981650-29981687)
chr1 (358-395)||(37125870-37125907)
chr1 (358-395)||(40567143-40567180)
chr1 (358-395)||(42372147-42372184)
chr1 (359-396)||(44317743-44317780)
chr1 (358-395)||(48708360-48708397)
[»] chr3 (13 HSPs)
chr3 (189-273)||(32994008-32994092)
chr3 (327-400)||(3650381-3650454)
chr3 (348-392)||(25894688-25894732)
chr3 (313-376)||(32994128-32994192)
chr3 (357-392)||(25911664-25911699)
chr3 (358-396)||(45045386-45045424)
chr3 (358-395)||(11232099-11232136)
chr3 (358-395)||(13594818-13594855)
chr3 (358-395)||(22729397-22729434)
chr3 (358-395)||(32270864-32270901)
chr3 (358-395)||(35083970-35084007)
chr3 (358-395)||(44254545-44254582)
chr3 (358-395)||(50527578-50527615)
[»] chr5 (9 HSPs)
chr5 (326-400)||(16285236-16285310)
chr5 (301-400)||(26683087-26683186)
chr5 (301-400)||(42141040-42141137)
chr5 (301-371)||(41700721-41700791)
chr5 (358-395)||(3631436-3631473)
chr5 (358-395)||(26525173-26525210)
chr5 (358-395)||(32304596-32304633)
chr5 (223-275)||(20117666-20117718)
chr5 (303-391)||(36244186-36244274)
[»] scaffold0014 (1 HSPs)
scaffold0014 (358-395)||(65225-65262)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 158 - 400
Target Start/End: Original strand, 1537996 - 1538236
Alignment:
Q  158 gtataaatgttaattgatacaagttttagttgcatatacacgacaaaaatcatgtatattatttgtgaaaccgccgaaatctaaaactgttgaaaagctg 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||| |||||||||||||||  ||||||||||||    
T  1537996 gtataaatgttaattgatacaagttttagttgcatatacacgacaaaaatcatgtatactatttcagaaatcgccgaaatctaaaatcgttgaaaagctg 1538095  T
Q  258 tttaaaatctcacaaaatctatctatgannnnnnnnnnnnctgggtgggtcactacaccactttacaaagatttggatgtgtcgataataaaaaacgtcg 357  Q
    ||||||||||||  |||| ||||||| |            |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1538096 tttaaaatctca--aaatttatctataattttttatttttctggatgggccactacaccactttacaaagatttggatgtgtcgataataaaaaacgtcg 1538193  T
Q  358 taaaattgtttaaaatctcgcataatagacctataattattaa 400  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  1538194 taaaattgtttaaaatctcgcataatagacctataattgttaa 1538236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 1537823 - 1537868
Alignment:
Q  16 gagccaagcatgactatagtattcatttccataggagataggtaag 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1537823 gagccaagcatgactatagtattcatttccataggagataggtaag 1537868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 398
Target Start/End: Complemental strand, 9467813 - 9467612
Alignment:
Q  197 acgacaaaaatcatgtatattatttgtgaaaccgccgaaatctaaaactgttgaaaagctgtttaaaatctcacaaaatctatctatgannnnnnnnnnn 296  Q
    |||| ||||||||||||| | | ||||  |||||||||||| |||||||||||||||  ||||||||||||||||||||  ||||||||               
T  9467813 acgataaaaatcatgtatct-acttgtagaaccgccgaaatttaaaactgttgaaaaattgtttaaaatctcacaaaattgatctatgattttttatttt 9467715  T
Q  297 nctgggtgggtcactacaccactttacaaagatttggatgtgtcgataataaaaaa-cgtcgtaaaattgtttaaaatctcgcataatagacctataatt 395  Q
      ||| |||| ||||| ||  |||| |||||||||||||||  | | |  |||||| |||| |||||||||||||||||||||| ||||||  |||||||    
T  9467714 tttggatgggccactatactgcttttcaaagatttggatgtaccaaaagcaaaaaaccgtcataaaattgtttaaaatctcgcagaatagatatataatt 9467615  T
Q  396 att 398  Q
    |||    
T  9467614 att 9467612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 400
Target Start/End: Original strand, 44788417 - 44788518
Alignment:
Q  299 tgggtgggtcactacaccactttacaaagatttggatgtgtcgataataaaaaacgtcgtaaaattgtttaaaatctcgcataatagacctataattatt 398  Q
    ||||| || ||||| |||||||||| || |||| ||| || ||| || |||||| |||| ||||||||||||||||||| | ||||||||||||||| ||    
T  44788417 tgggttggccactataccactttactaaaattttgatatgccgaaaacaaaaaatgtcgcaaaattgtttaaaatctcgaaaaatagacctataattgtt 44788516  T
Q  399 aa 400  Q
    ||    
T  44788517 aa 44788518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 40897552 - 40897646
Alignment:
Q  190 catatacacgacaaaaatcatgtatattatttgtgaaaccgccgaaatctaaaactgttgaaaagctgtttaaaatctcacaaaatctatctatga 285  Q
    |||||||| ||||||||||||||||  || || || || ||||||||||| |||| ||||||||  ||||||||||||||||||||  ||||||||    
T  40897552 catatacatgacaaaaatcatgtatgctacttatggaatcgccgaaatct-aaaccgttgaaaaattgtttaaaatctcacaaaatagatctatga 40897646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 1537894 - 1537939
Alignment:
Q  57 gtaagtgtatttgagttgtggttagtgaaaaaattacttgagggag 102  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||    
T  1537894 gtaagtgtaattgagttgtggttagtgaaaaaattacttgggggag 1537939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 396
Target Start/End: Original strand, 1114982 - 1115020
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatta 396  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  1114982 taaaattgtataaaatctcgcaaaatagacctataatta 1115020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 396
Target Start/End: Original strand, 13615907 - 13615945
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatta 396  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  13615907 taaaattgtataaaatctcgcaaaatagacctataatta 13615945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 11765008 - 11764971
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  11765008 taaaattgtataaaatctcgcaaaatagacctataatt 11764971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 16194466 - 16194429
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  16194466 taaaattgtataaaatctcgcaaaatagacctataatt 16194429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 26860606 - 26860643
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  26860606 taaaattgtataaaatctcgcaaaatagacctataatt 26860643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 31392760 - 31392723
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  31392760 taaaattgtataaaatctcgcaaaatagacctataatt 31392723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 34983490 - 34983453
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  34983490 taaaattgtataaaatctcgcaaaatagacctataatt 34983453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 36436126 - 36436163
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  36436126 taaaattgtataaaatctcgcaaaatagacctataatt 36436163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 38763928 - 38763891
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  38763928 taaaattgtataaaatctcgcaaaatagacctataatt 38763891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 42016717 - 42016680
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  42016717 taaaattgtataaaatctcgcaaaatagacctataatt 42016680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 44545673 - 44545710
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  44545673 taaaattgtataaaatctcgcaaaatagacctataatt 44545710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 29141875 - 29141911
Alignment:
Q  359 aaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  29141875 aaaattgtttaaagtctcgcaaaatagacctataatt 29141911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 31643555 - 31643591
Alignment:
Q  359 aaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  31643555 aaaattgtttaaagtctcgcaaaatagacctataatt 31643591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 394
Target Start/End: Original strand, 40897658 - 40897754
Alignment:
Q  299 tgggtgggtcactacaccactttacaaagatttggatgtgtcgataataaaaaa-cgtcgtaaaattgtttaaaatctcgcataatagacctataat 394  Q
    ||| |||| || |||| ||||||||| |||||| |||||| ||| || |||||| | ||  ||||||||||||||||||||  |||| |||||||||    
T  40897658 tggatgggccattacatcactttacagagattttgatgtgccgaaaacaaaaaaacatcacaaaattgtttaaaatctcgcgaaataaacctataat 40897754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 195 - 400
Target Start/End: Complemental strand, 2045133 - 2044929
Alignment:
Q  195 acacgacaaaaatcatgtatattatttgtgaaaccgccgaaatctaaaactgttgaaaagctgtttaaaatctcacaaaatctatctatgannnnnnnnn 294  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||||||| ||||||||  | ||||||||||||||||||  |||||| |             
T  2045133 acacgacaaaaatcatgtataatatttgtggaaccaccgaaatctaaaaccgttgaaaaattctttaaaatctcacaaaattgatctat-agttttttat 2045035  T
Q  295 nnnctgggtgggtcactacaccactttacaaagatttggatgtgtcgataataaaaaacgtcgtaaaattgtttaaaatctcgcataatagacctataat 394  Q
        | |||  | ||||||||||||||||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||| || ||||||    
T  2045034 tttttaggtcagccactacaccactttacaaagatttggatgtgccgaaggcaaaaaacgtcgtaaaattgtttaaaatctcgcataatatacatataat 2044935  T
Q  395 tattaa 400  Q
    | ||||    
T  2044934 tgttaa 2044929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 197 - 395
Target Start/End: Original strand, 2399195 - 2399399
Alignment:
Q  197 acgacaaaaatcatgtatattatttgtgaaaccgccgaaatctaaaactgttgaaaagctgtttaaaatctcacaaaatctatctatgannnnnnnnnnn 296  Q
    ||||||||||||||||||| |||||||| ||| |||||||||||||||  |||||||  |||||||||||| |||||||  | |||| |               
T  2399195 acgacaaaaatcatgtatactatttgtggaacggccgaaatctaaaacaattgaaaaattgtttaaaatcttacaaaattgacctataatttttaatttt 2399294  T
Q  297 nctgggtgggtcactacaccactttacaaagatttggatgtg------tcgataataaaaaacgtcgtaaaattgtttaaaatctcgcataatagaccta 390  Q
     ||||||||| ||||||||| ||||||| |||||||||||||       | | || ||||||  ||||||||||||||||||||||||| ||||||||||    
T  2399295 tctgggtgggccactacaccgctttacagagatttggatgtgccaaaaacaaaaaaaaaaaaattcgtaaaattgtttaaaatctcgcagaatagaccta 2399394  T
Q  391 taatt 395  Q
    |||||    
T  2399395 taatt 2399399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 18235185 - 18235089
Alignment:
Q  189 gcatatacacgacaaaaatcatgtatattatttgtgaaaccgccgaaatctaaaactgttgaaaagctgtttaaaatctcacaaaatctatctatga 285  Q
    ||||| ||||||||||||||||||||| || ||||| ||| |||||||||| |||| ||||||||  |||||||||||| |||||||  ||||||||    
T  18235185 gcatagacacgacaaaaatcatgtatactacttgtggaactgccgaaatctgaaaccgttgaaaaattgtttaaaatcttacaaaattgatctatga 18235089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 18235018 - 18234972
Alignment:
Q  354 gtcgtaaaattgtttaaaatctcgcataatagacctataattattaa 400  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||    
T  18235018 gtcgtaaaattgtttaaaatctcgcaaaatatacctataattattaa 18234972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 13405256 - 13405331
Alignment:
Q  200 acaaaaatcatgtatattatttgtgaaaccgccgaaatctaaaactgttgaaaagctgtttaaaatctcacaaaat 275  Q
    |||||||||| |||| | | || | ||||||||||||  |||||||||||||||  ||||||||||||| ||||||    
T  13405256 acaaaaatcacgtatgtcacttttaaaaccgccgaaaattaaaactgttgaaaaattgtttaaaatctcgcaaaat 13405331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 2660782 - 2660819
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  2660782 taaaattgtataaaatctcgcaaaatagacctataatt 2660819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 7022032 - 7021995
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  7022032 taaaattgtataaaatctcgcaaaatagacctataatt 7021995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 15469304 - 15469267
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  15469304 taaaattgtataaaatctcgcaaaatagacctataatt 15469267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 26468663 - 26468626
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  26468663 taaaattgtataaaatctcgcaaaatagacctataatt 26468626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 12698595 - 12698559
Alignment:
Q  359 aaaattgtttaaaatctcgcataatagacctataatt 395  Q
    |||||||| |||||||||||| |||||||||||||||    
T  12698595 aaaattgtataaaatctcgcaaaatagacctataatt 12698559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 12996612 - 12996576
Alignment:
Q  359 aaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  12996612 aaaattgtttaaagtctcgcaaaatagacctataatt 12996576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 391
Target Start/End: Original strand, 13405307 - 13405339
Alignment:
Q  359 aaaattgtttaaaatctcgcataatagacctat 391  Q
    ||||||||||||||||||||| |||||||||||    
T  13405307 aaaattgtttaaaatctcgcaaaatagacctat 13405339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 190 - 400
Target Start/End: Original strand, 25303775 - 25303990
Alignment:
Q  190 catatacacgacaaaaatcatgtatattatttgtgaaaccgccgaaatctaaaactgttgaaaagctgtttaaaatctcacaaaatctatctatgannnn 289  Q
    |||| ||||||||||||||||||||| || |||||||| ||  |||||||||||| ||||||||  ||| ||||||||||||||||  |||||| |        
T  25303775 catagacacgacaaaaatcatgtatactacttgtgaaatcgttgaaatctaaaaccgttgaaaaattgtctaaaatctcacaaaattgatctataattta 25303874  T
Q  290 nnnnnnnn-----ctgggtgggtcactacaccactttacaaagatttggatgtgtcgataataaaaaacgtcgtaaaattgtttaaaatctcgcataata 384  Q
                 |||| |||| ||||||||| ||||||| ||||||| ||||| ||| || ||||||| |||||||||||||||||||||| |||||||    
T  25303875 ttaattttttttcctggatgggccactacaccgctttacatagatttgaatgtgccgaaaacaaaaaacatcgtaaaattgtttaaaatctcacataata 25303974  T
Q  385 gacctataattattaa 400  Q
    ||||||||||| ||||    
T  25303975 gacctataattgttaa 25303990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 17167081 - 17167044
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  17167081 taaaattgtataaaatctcgcaaaatagacctataatt 17167044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 22723720 - 22723757
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  22723720 taaaattgtataaaatctcgcaaaatagacctataatt 22723757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 23469340 - 23469377
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  23469340 taaaattgtataaaatctcgcaaaatagacctataatt 23469377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 29075129 - 29075166
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  29075129 taaaattgtataaaatctcgcaaaatagacctataatt 29075166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 31065567 - 31065604
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  31065567 taaaattgtataaaatctcgcaaaatagacctataatt 31065604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 36675431 - 36675468
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  36675431 taaaattgtataaaatctcgcaaaatagacctataatt 36675468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 40055805 - 40055768
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  40055805 taaaattgtataaaatctcgcaaaatagacctataatt 40055768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 44142975 - 44142938
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  44142975 taaaattgtataaaatctcgcaaaatagacctataatt 44142938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 44467965 - 44468002
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  44467965 taaaattgtataaaatctcgcaaaatagacctataatt 44468002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 44724007 - 44724044
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  44724007 taaaattgtataaaatctcgcaaaatagacctataatt 44724044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 45350265 - 45350228
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  45350265 taaaattgtataaaatctcgcaaaatagacctataatt 45350228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 46027894 - 46027857
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  46027894 taaaattgtataaaatctcgcaaaatagacctataatt 46027857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 23469227 - 23469263
Alignment:
Q  359 aaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||||||||||||||| | |||||||||||||    
T  23469227 aaaattgtttaaaatctcgcaaattagacctataatt 23469263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 25174361 - 25174325
Alignment:
Q  359 aaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  25174361 aaaattgtttaaagtctcgcaaaatagacctataatt 25174325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 189 - 395
Target Start/End: Original strand, 26149321 - 26149525
Alignment:
Q  189 gcatatacacgacaaaaatcatgtatattatttgtgaaaccgccgaaatctaaaactgttgaaaagctgtttaaaatctcacaaaatctatctatgannn 288  Q
    ||||| ||||||||||||||||||||| || ||| | || |||||||||||||||| ||||||||  |||||||| |||||||||||  ||||||||       
T  26149321 gcatagacacgacaaaaatcatgtatactacttgcggaatcgccgaaatctaaaaccgttgaaaa-ttgtttaaagtctcacaaaattgatctatgattt 26149419  T
Q  289 nnnnnnnnnctgggtgggtcactacaccactttacaaagatttggatgtgtcgataataaaaaacgtcgtaaaattgtttaaaatctcgcataatagacc 388  Q
              |||||||| ||||||||  ||||| | ||||||||||||| ||| || ||||||| || || ||||||||||||||||||| |||| |||    
T  26149420 tttttttta-tgggtgggccactacactgctttatagagatttggatgtgccgaaaacaaaaaacttcatataattgtttaaaatctcgcaaaataaacc 26149518  T
Q  389 tataatt 395  Q
    |||||||    
T  26149519 tataatt 26149525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 8996561 - 8996525
Alignment:
Q  359 aaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||||||||||||||| |||||||||||||||    
T  8996561 aaaattgtttaaaatctcgcaaaatagacctataatt 8996525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 3886725 - 3886762
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  3886725 taaaattgtataaaatctcgcaaaatagacctataatt 3886762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 5590118 - 5590155
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  5590118 taaaattgtataaaatctcgcaaaatagacctataatt 5590155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 7012552 - 7012515
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  7012552 taaaattgtataaaatctcgcaaaatagacctataatt 7012515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 22658291 - 22658328
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  22658291 taaaattgtataaaatctcgcaaaatagacctataatt 22658328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 33180498 - 33180547
Alignment:
Q  226 aaccgccgaaatctaaaactgttgaaaagctgtttaaaatctcacaaaat 275  Q
    ||||||||||| |||||| |||||||||  || |||||||||||||||||    
T  33180498 aaccgccgaaaactaaaattgttgaaaaattgattaaaatctcacaaaat 33180547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 36060572 - 36060535
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  36060572 taaaattgtataaaatctcgcaaaatagacctataatt 36060535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 42556038 - 42556075
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  42556038 taaaattgtataaaatctcgcaaaatagacctataatt 42556075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 43117564 - 43117527
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  43117564 taaaattgtataaaatctcgcaaaatagacctataatt 43117527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 197304 - 197268
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataat 394  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  197304 taaaattgtataaaatctcgcaaaatagacctataat 197268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 312141 - 312105
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataat 394  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  312141 taaaattgtataaaatctcgcaaaatagacctataat 312105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 7413359 - 7413323
Alignment:
Q  359 aaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  7413359 aaaattgtttaaagtctcgcaaaatagacctataatt 7413323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 38567344 - 38567308
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataat 394  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  38567344 taaaattgtataaaatctcgcaaaatagacctataat 38567308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 43117449 - 43117413
Alignment:
Q  359 aaaattgtttaaaatctcgcataatagacctataatt 395  Q
    |||||||| |||||||||||| |||||||||||||||    
T  43117449 aaaattgtataaaatctcgcaaaatagacctataatt 43117413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 299 - 400
Target Start/End: Original strand, 11975722 - 11975823
Alignment:
Q  299 tgggtgggtcactacaccactttacaaagatttggatgtgtcgataataaaaaacgtcgtaaaattgtttaaaatctcgcataatagacctataattatt 398  Q
    ||||| || ||||||||||||| ||| ||||||| ||||||||| || |||||| |||| ||||||||||||||||||||| ||||||||||||||| ||    
T  11975722 tgggttggccactacaccacttaacagagatttgaatgtgtcgaaaacaaaaaatgtcgaaaaattgtttaaaatctcgcagaatagacctataattgtt 11975821  T
Q  399 aa 400  Q
    ||    
T  11975822 aa 11975823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 400
Target Start/End: Complemental strand, 9024254 - 9024153
Alignment:
Q  299 tgggtgggtcactacaccactttacaaagatttggatgtgtcgataataaaaaacgtcgtaaaattgtttaaaatctcgcataatagacctataattatt 398  Q
    |||||||| ||||| |||||||||||||||||  |||||| ||| || ||||||| ||  |||||| ||||||||| |||| | |||| ||||||| |||    
T  9024254 tgggtgggccactataccactttacaaagattctgatgtgccgaaaacaaaaaacatcacaaaattttttaaaatcccgcaaagtagatctataatcatt 9024155  T
Q  399 aa 400  Q
    ||    
T  9024154 aa 9024153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 400
Target Start/End: Complemental strand, 32151208 - 32151117
Alignment:
Q  309 actacaccactttacaaagatttggatgtgtcgataataaaaaacgtcgtaaaattgtttaaaatctcgcataatagacctataattattaa 400  Q
    |||||||| ||||| | ||||||| ||||| | | || || |||||| ||||||||||||||||||| |||||||| | |||||||| ||||    
T  32151208 actacacctctttatagagatttgaatgtgccaaaaacaagaaacgttgtaaaattgtttaaaatctagcataataaatctataattgttaa 32151117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 400
Target Start/End: Original strand, 50376278 - 50376376
Alignment:
Q  301 ggtgggtcactacaccactttacaaagatttggatgtgtcgataataaaaaacgtcgtaaaattgtttaaaatctcgcataatagacctataattattaa 400  Q
    |||||| |||||||||| |||||   ||||| |||||| ||| |||||||||| ||  ||||||||||||||||| ||| | |||||| |||||||||||    
T  50376278 ggtgggccactacacca-tttacggggatttcgatgtgccgaaaataaaaaacatcacaaaattgtttaaaatcttgcaaattagacccataattattaa 50376376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 275
Target Start/End: Complemental strand, 32151335 - 32151250
Alignment:
Q  189 gcatatacacgacaaaaatcatgtatattatttgtgaaaccgccgaaatctaaaactgttgaaaagctgtttaaaatctcacaaaat 275  Q
    ||||| |||| |||||||||||||||| || |   ||| |||| |||||||||||| ||||||||  ||||| ||||||||||||||    
T  32151335 gcataaacacaacaaaaatcatgtatactactccggaa-ccgctgaaatctaaaaccgttgaaaaaatgttttaaatctcacaaaat 32151250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 10096400 - 10096437
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  10096400 taaaattgtataaaatctcgcaaaatagacctataatt 10096437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 12700512 - 12700549
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  12700512 taaaattgtataaaatctcgcaaaatagacctataatt 12700549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 13233444 - 13233407
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  13233444 taaaattgtataaaatctcgcaaaatagacctataatt 13233407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 22647325 - 22647288
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  22647325 taaaattgtataaaatctcgcaaaatagacctataatt 22647288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 31581694 - 31581731
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  31581694 taaaattgtataaaatctcgcaaaatagacctataatt 31581731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 36584637 - 36584600
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  36584637 taaaattgtataaaatctcgcaaaatagacctataatt 36584600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 36954954 - 36954991
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  36954954 taaaattgtataaaatctcgcaaaatagacctataatt 36954991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 41832591 - 41832554
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  41832591 taaaattgtataaaatctcgcaaaatagacctataatt 41832554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 44134707 - 44134670
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  44134707 taaaattgtataaaatctcgcaaaatagacctataatt 44134670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 44817494 - 44817531
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  44817494 taaaattgtataaaatctcgcagaatagacctataatt 44817531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 7776983 - 7776947
Alignment:
Q  359 aaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  7776983 aaaattgtttaaagtctcgcaaaatagacctataatt 7776947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 13857826 - 13857790
Alignment:
Q  359 aaaattgtttaaaatctcgcataatagacctataatt 395  Q
    |||| |||||||||||||||| |||||||||||||||    
T  13857826 aaaaatgtttaaaatctcgcaaaatagacctataatt 13857790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 13869356 - 13869320
Alignment:
Q  359 aaaattgtttaaaatctcgcataatagacctataatt 395  Q
    |||| |||||||||||||||| |||||||||||||||    
T  13869356 aaaaatgtttaaaatctcgcaaaatagacctataatt 13869320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 400
Target Start/End: Complemental strand, 15632243 - 15632191
Alignment:
Q  348 aaaaacgtcgtaaaattgtttaaaatctcgcataatagacctataattattaa 400  Q
    |||| ||||| ||||||||||||||||||| | |||||||||| |||| ||||    
T  15632243 aaaaccgtcgcaaaattgtttaaaatctcgtaaaatagacctacaattgttaa 15632191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 394
Target Start/End: Complemental strand, 50767135 - 50767099
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataat 394  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  50767135 taaaattgtataaaatctcgcaaaatagacctataat 50767099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 400
Target Start/End: Complemental strand, 45807173 - 45807071
Alignment:
Q  298 ctgggtgggtcactacaccactttacaaagatttggatgtgtcgataataaaaaacgtcgtaaaattgtttaaaatctcgcataatagacctataattat 397  Q
    ||||||| ||||||||| | ||||||| | ||||| ||||| | | || ||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  45807173 ctgggtgagtcactacatcgctttacataaatttgaatgtgccaagaacaaaaaacgtcgtaaaattgtttaaaatctcgcaaaatagacctataattgt 45807074  T
Q  398 taa 400  Q
    |||    
T  45807073 taa 45807071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 400
Target Start/End: Original strand, 17879864 - 17879959
Alignment:
Q  308 cactacaccactttacaaagatttggatgtgtcgataataaaaaa---cgtcgtaaaattgtttaaaatctcgcataatagacctataattattaa 400  Q
    |||||||||||||| || |||||| |||||| ||| || ||||||   | ||||||||||||||||||||||||| |||| || ||||||||||||    
T  17879864 cactacaccacttttcagagatttagatgtgccgaaaacaaaaaaaaacatcgtaaaattgtttaaaatctcgcaaaataaacatataattattaa 17879959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 45807283 - 45807195
Alignment:
Q  197 acgacaaaaatcatgtatattatttgtgaaaccgccgaaatctaaaactgttgaaaagctgtttaaaatctcacaaaatctatctatga 285  Q
    |||||||||||||  |||| || | |||||||||||||||| |||||| ||||||||  |||||||||||| |||||||  ||||||||    
T  45807283 acgacaaaaatcacatatactactcgtgaaaccgccgaaatttaaaaccgttgaaaaattgtttaaaatcttacaaaatagatctatga 45807195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 1243510 - 1243583
Alignment:
Q  200 acaaaaatcatgtatattatttgtgaaaccgccgaaatctaaaactgttgaaaagctgtttaaaatctcacaaa 273  Q
    |||||||||||||||| || ||||  ||| |||||||| |||||| ||||||||  ||||||||||||||||||    
T  1243510 acaaaaatcatgtatactacttgtagaactgccgaaatataaaaccgttgaaaaattgtttaaaatctcacaaa 1243583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 1243661 - 1243714
Alignment:
Q  347 aaaaaacgtcgtaaaattgtttaaaatctcgcataatagacctataattattaa 400  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  1243661 aaaaaatgtcgtacaattgtttaaaatctcgcaaaatagacctataattgttaa 1243714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 396
Target Start/End: Complemental strand, 45837058 - 45837020
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatta 396  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  45837058 taaaattgtataaaatctcgcaaaatagacctataatta 45837020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 919653 - 919690
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  919653 taaaattgtataaaatctcgcaaaatagacctataatt 919690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 8086444 - 8086407
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  8086444 taaaattgtataaaatctcgcaaaatagacctataatt 8086407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 17879751 - 17879824
Alignment:
Q  202 aaaaatcatgtatattatttgtgaaaccgccgaaatctaaaactgttgaaaagctgtttaaaatctcacaaaat 275  Q
    |||||||||||||   | ||||| |||||| ||||| ||||||| |||||||  |||||||||||| |||||||    
T  17879751 aaaaatcatgtatgccacttgtggaaccgctgaaatttaaaactattgaaaaaatgtttaaaatcttacaaaat 17879824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 24790649 - 24790612
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  24790649 taaaattgtataaaatctcgcaaaatagacctataatt 24790612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 25299031 - 25299068
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  25299031 taaaattgtataaaatctcgcaaaatagacctataatt 25299068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 29981650 - 29981687
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  29981650 taaaattgtataaaatctcgcaaaatagacctataatt 29981687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 37125907 - 37125870
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  37125907 taaaattgtataaaatctcgcaaaatagacctataatt 37125870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 40567180 - 40567143
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  40567180 taaaattgtataaaatctcgcaaaatagacctataatt 40567143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 42372184 - 42372147
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  42372184 taaaattgtataaaatctcgcaaaatagacctataatt 42372147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 44317780 - 44317743
Alignment:
Q  359 aaaattgtttaaaatctcgcataatagacctataatta 396  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  44317780 aaaattgtataaaatctcgcaaaatagacctataatta 44317743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 48708360 - 48708397
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  48708360 taaaattgtataaaatctcgcaaaatagacctataatt 48708397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 32994008 - 32994092
Alignment:
Q  189 gcatatacacgacaaaaatcatgtatattatttgtgaaaccgccgaaatctaaaactgttgaaaagctgtttaaaatctcacaaa 273  Q
    ||||| |||| |||||||||||||||| || ||||| ||||||||||||||| |||  |||||||  ||||||||||||||||||    
T  32994008 gcatagacaccacaaaaatcatgtatactacttgtggaaccgccgaaatctagaaccattgaaaaattgtttaaaatctcacaaa 32994092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 400
Target Start/End: Complemental strand, 3650454 - 3650381
Alignment:
Q  327 gatttggatgtgtcgataataaaaaacgtcgtaaaattgtttaaaatctcgcataatagacctataattattaa 400  Q
    |||||||||||| ||| ||||||||  |||  |||||||||||||||||  || | ||||||||||||||||||    
T  3650454 gatttggatgtgccgaaaataaaaattgtcacaaaattgtttaaaatcttacaaattagacctataattattaa 3650381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 392
Target Start/End: Original strand, 25894688 - 25894732
Alignment:
Q  348 aaaaacgtcgtaaaattgtttaaaatctcgcataatagacctata 392  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||||    
T  25894688 aaaatcgtggtaaaattgtttaaaatctcgcaaaatagacctata 25894732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 376
Target Start/End: Original strand, 32994128 - 32994192
Alignment:
Q  313 caccactttacaaagatttggatgtgtcgataataaaaa-acgtcgtaaaattgtttaaaatctc 376  Q
    |||| |||||||||||||||||||||||||  | |||||  | ||||||||||||||||||||||    
T  32994128 caccgctttacaaagatttggatgtgtcgaagacaaaaaggcatcgtaaaattgtttaaaatctc 32994192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 392
Target Start/End: Original strand, 25911664 - 25911699
Alignment:
Q  357 gtaaaattgtttaaaatctcgcataatagacctata 392  Q
    ||||||||||||||||||||||| ||||||||||||    
T  25911664 gtaaaattgtttaaaatctcgcaaaatagacctata 25911699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 396
Target Start/End: Complemental strand, 45045424 - 45045386
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatta 396  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  45045424 taaaattgtataaaatctcgcaaaatagacctataatta 45045386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 11232099 - 11232136
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  11232099 taaaattgtataaaatctcgcaaaatagacctataatt 11232136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 13594818 - 13594855
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  13594818 taaaattgtataaaatctcgcaaaatagacctataatt 13594855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 22729434 - 22729397
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  22729434 taaaattgtataaaatctcgcaaaatagacctataatt 22729397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 32270864 - 32270901
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  32270864 taaaattgtataaaatctcgcaaaatagacctataatt 32270901  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 35084007 - 35083970
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  35084007 taaaattgtataaaatctcgcaaaatagacctataatt 35083970  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 44254545 - 44254582
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  44254545 taaaattgtataaaatctcgcaaaatagacctataatt 44254582  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 50527578 - 50527615
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  50527578 taaaattgtataaaatctcgcaaaatagacctataatt 50527615  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 400
Target Start/End: Original strand, 16285236 - 16285310
Alignment:
Q  326 agatttggatgtgtcgataataaaaaacgtcgtaaaattgtttaaaatctcgcataatagacctataattattaa 400  Q
    ||||||||||||| ||| ||  ||||  ||||||||||||||||||||||| || |||  |||||||||||||||    
T  16285236 agatttggatgtgccgaaaactaaaactgtcgtaaaattgtttaaaatctcacaaaatgaacctataattattaa 16285310  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 400
Target Start/End: Original strand, 26683087 - 26683186
Alignment:
Q  301 ggtgggtcactacaccactttacaaagatttggatgtgtcgataataaaaaacgtcgtaaaattgtttaaaatctcgcataatagacctataattattaa 400  Q
    |||||| |||| |||||||||| | |||||| ||||||   | || ||||||| ||  |||||||||||||||||| || |||| |||||||||| ||||    
T  26683087 ggtgggccactgcaccactttatagagattttgatgtgctaaaaacaaaaaacatcacaaaattgtttaaaatctcacaaaataaacctataattgttaa 26683186  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 400
Target Start/End: Complemental strand, 42141137 - 42141040
Alignment:
Q  301 ggtgggtcactacaccactttacaaagatttggatgtgtcgataataaaaaacgtcgtaaaattgtttaaaatctcgcataatagacctataattattaa 400  Q
    |||||| ||||||| || ||||  |||||||||||||| | | |||||||| |||| ||||||||||| |||||  ||| | ||||||||||||||||||    
T  42141137 ggtgggccactacatcattttatgaagatttggatgtgccaaaaataaaaa-cgtcataaaattgttt-aaatcatgcaaattagacctataattattaa 42141040  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 371
Target Start/End: Complemental strand, 41700791 - 41700721
Alignment:
Q  301 ggtgggtcactacaccactttacaaagatttggatgtgtcgataataaaaaacgtcgtaaaattgtttaaa 371  Q
    |||||| ||||||||||||||||    ||||||||||| | | |||||||||||||  |||||||||||||    
T  41700791 ggtgggccactacaccactttacgggaatttggatgtgccaaaaataaaaaacgtcacaaaattgtttaaa 41700721  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 3631473 - 3631436
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  3631473 taaaattgtataaaatctcgcaaaatagacctataatt 3631436  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 26525173 - 26525210
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  26525173 taaaattgtataaaatctcgcaaaatagacctataatt 26525210  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 32304596 - 32304633
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  32304596 taaaattgtataaaatctcgcaaaatagacctataatt 32304633  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 20117718 - 20117666
Alignment:
Q  223 tgaaaccgccgaaatctaaaactgttgaaaagctgtttaaaatctcacaaaat 275  Q
    |||||||||||||| ||||||  ||||||||| |||||||| |||| ||||||    
T  20117718 tgaaaccgccgaaaactaaaatcgttgaaaagttgtttaaagtctcgcaaaat 20117666  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 391
Target Start/End: Original strand, 36244186 - 36244274
Alignment:
Q  303 tgggtcactacaccactttacaaagatttggatgtgtcgataataaaaaacgtcgtaaaattgtttaaaatctcgcataatagacctat 391  Q
    |||| |||| || ||||||||| | ||||| ||||| ||| || ||||||| ||  |||||||||||||||||| || |||||| ||||    
T  36244186 tgggccactgcatcactttacacatatttgaatgtgccgaaaacaaaaaacatcacaaaattgtttaaaatctcacaaaatagatctat 36244274  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 65262 - 65225
Alignment:
Q  358 taaaattgtttaaaatctcgcataatagacctataatt 395  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  65262 taaaattgtataaaatctcgcaaaatagacctataatt 65225  T

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