View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3687_low_16 (Length: 421)

Name: NF3687_low_16
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3687_low_16
NF3687_low_16
[»] chr8 (4 HSPs)
chr8 (1-379)||(33897625-33898006)
chr8 (1-222)||(32166600-32166820)
chr8 (128-214)||(35574613-35574699)
chr8 (23-95)||(35574734-35574806)
[»] chr4 (6 HSPs)
chr4 (1-224)||(25234163-25234386)
chr4 (67-230)||(15131532-15131697)
chr4 (37-222)||(54000012-54000199)
chr4 (132-220)||(20512794-20512882)
chr4 (126-222)||(4115350-4115444)
chr4 (60-101)||(25062434-25062475)
[»] chr7 (4 HSPs)
chr7 (1-225)||(34891421-34891646)
chr7 (2-97)||(42012690-42012784)
chr7 (124-191)||(32138882-32138949)
chr7 (134-220)||(3191534-3191620)
[»] chr5 (6 HSPs)
chr5 (1-222)||(7113579-7113804)
chr5 (132-227)||(37077780-37077875)
chr5 (138-214)||(5205511-5205587)
chr5 (128-191)||(2243312-2243375)
chr5 (132-222)||(973131-973221)
chr5 (124-222)||(14138557-14138655)
[»] chr2 (3 HSPs)
chr2 (144-235)||(2909854-2909945)
chr2 (124-214)||(16576260-16576350)
chr2 (147-220)||(34176739-34176812)
[»] chr3 (1 HSPs)
chr3 (60-222)||(39341145-39341309)
[»] chr1 (5 HSPs)
chr1 (128-222)||(68113-68207)
chr1 (124-190)||(46080983-46081049)
chr1 (77-220)||(7997156-7997301)
chr1 (67-222)||(44341997-44342152)
chr1 (126-155)||(35956997-35957026)
[»] chr6 (2 HSPs)
chr6 (128-219)||(23577167-23577258)
chr6 (124-222)||(32342612-32342710)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 33897625 - 33898006
Alignment:
Q  1 cttcatttaatatgagatttacatctttttcgttccaaaatctaatcgtgtttgtcatcaggggttaattactctcaattcatcaaggaaaaatgtaggc 100  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||||||||||| |||||||  || |||||||||||||| |||||||||||||||||||    
T  33897625 cttcatttaacatgtgatttacatctttttcgttctaaaatctaatcgtgtttatcatcagatgtaaattactctcaattaatcaaggaaaaatgtaggc 33897724  T
Q  101 tcgtcgatatatttttcgttact-tcaattaccatttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcg 199  Q
    ||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||| ||||  |||||||||||||||||| ||||||||||||||    
T  33897725 tcgtcgatatatttttctttactatcaattactattttcatctcaaaaacatcaaaattcttaatttccttcattcaacatgtaacctccatttatttcg 33897824  T
Q  200 tttcaaaatcgaatcttatttattatcaggataacttaggcctcgcccgtttaatataatttgaaatgatatcaagagaaagcctcttgatta--atata 297  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  33897825 tttcaaaatcgaatcttatttattataaggataacttaggcctcacccgtttaatataatttgaaatgatatcaagagaaagcctcttgattaatatata 33897924  T
Q  298 gcattagttaagtaagctagcctattgggaataaaataaggttaggagtacgtctcttactaccccactaatcctcaatcat 379  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33897925 acattagttaagtaagctagcccattgggaataaaataaggttaggagtacgtctcttactaccccactaatcctcaatcat 33898006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32166820 - 32166600
Alignment:
Q  1 cttcatttaatatgagatttacatctttttcgttccaaaatctaatcgtgtttgtcatcaggggttaattactctcaattcatcaaggaaaaatgtaggc 100  Q
    |||||||||| ||| ||||||||||| ||||||||||||||| ||||||  ||||||| || ||| |||||| | ||||||||||| |||||||||| ||    
T  32166820 cttcatttaacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaaagaaaaatgtatgc 32166721  T
Q  101 tcgtcgatatatttttcgttact-tcaattaccatttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcg 199  Q
    || ||||||  |||||| ||||| ||||||| |||||| ||||||| ||||||||| ||| | ||| |||| |||||||||||||||| ||| | |||||    
T  32166720 tcatcgata-gtttttc-ttactatcaattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctctttcg 32166623  T
Q  200 tttcaaaatcgaatcttatttat 222  Q
    ||| | ||| ||||||| |||||    
T  32166622 ttttagaattgaatcttttttat 32166600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 35574699 - 35574613
Alignment:
Q  128 ttaccatttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatc 214  Q
    |||| ||||| |||| || ||||||||| ||  | ||| | |||||||||||||| |||||||| | ||||||| ||||||||||||    
T  35574699 ttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatctttttcgttccaaaatcgaatc 35574613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 35574806 - 35574734
Alignment:
Q  23 atctttttcgttccaaaatctaatcgtgtttgtcatcaggggttaattactctcaattcatcaaggaaaaatg 95  Q
    |||| ||||||||||||||| |||| |  ||||||| || ||| |||||| ||||||||||||| ||| ||||    
T  35574806 atctctttcgttccaaaatcgaatcatagttgtcattagcggtaaattaccctcaattcatcaatgaataatg 35574734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 25234386 - 25234163
Alignment:
Q  1 cttcatttaatatgagatttacatctttttcgttccaaaatctaatcgtgtttgtcatcaggggttaattactctcaattcatcaaggaaaaatgtaggc 100  Q
    ||||||||||  || |||||| | || || |||||||||||| |||||| |||||||| || ||| |||||| |  ||||||||||||||||||||||||    
T  25234386 cttcatttaaggtgtgatttatacctcttacgttccaaaatcgaatcgtatttgtcatgagcggtaaattacccgtaattcatcaaggaaaaatgtaggc 25234287  T
Q  101 tcgtcgatatatttttcgttacttcaattaccatttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcgt 200  Q
    || | |||||  ||||| |  | ||| |||||||||| ||||||| ||||||||| ||| ||||  |||||  |||| |||| || | |||||||||| |    
T  25234286 tcattgatatggttttcttagcatcagttaccattttcatctcaagaacatcaaatttcttaatatccttccgtcaatatgtgatatgcatttatttcat 25234187  T
Q  201 ttcaaaatcgaatcttatttatta 224  Q
    |||||||| ||||  |||||||||    
T  25234186 ttcaaaattgaattatatttatta 25234163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 67 - 230
Target Start/End: Complemental strand, 15131697 - 15131532
Alignment:
Q  67 aattactctcaattcatcaaggaaaaatgtaggctcgtcgatata-tttttcgttact-tcaattaccatttttatctcaaaaacatcaaaattcgtaat 164  Q
    |||||| || ||||||||||| |  ||||||||||| |||||||  |||||  ||||| ||| |||||||||||||||||| ||||||||| ||| | ||    
T  15131697 aattacccttaattcatcaagaattaatgtaggctcatcgatatggttttttcttactatcagttaccatttttatctcaagaacatcaaatttcttcat 15131598  T
Q  165 ccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatcttatttattatcagga 230  Q
    | |||||||||| ||||| ||||| ||||| ||||||| |||||  |||||||||| |||| ||||    
T  15131597 ctccttcattcagcatgtgatctctatttacttcgtttaaaaattaaatcttatttcttattagga 15131532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 37 - 222
Target Start/End: Complemental strand, 54000199 - 54000012
Alignment:
Q  37 aaaatctaatcgtgtttgtcatcaggggttaattactctcaattcatcaaggaaaaatgtaggctcgtcgatata-tttttcgttact-tcaattaccat 134  Q
    |||||| |||||| |||||||| | | || |||||| |||| ||||| ||  ||||||||||  || |||||||  |||||  ||||| |||||||||||    
T  54000199 aaaatcgaatcgtatttgtcatgacgagtaaattacactcagttcataaaaaaaaaatgtagattcatcgatatggttttttcttactatcaattaccat 54000100  T
Q  135 ttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatcttatttat 222  Q
    ||| ||||||| ||||||||||    | ||| | || ||||||||||| ||||||||||| ||||||| |||||  ||||||||||||    
T  54000099 tttcatctcaagaacatcaaaaaaattcatcacatttattcaacatgtgatctccatttacttcgttttaaaattaaatcttatttat 54000012  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 20512882 - 20512794
Alignment:
Q  132 catttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatcttattt 220  Q
    |||||| |||| | |||||||||| ||| | |||  ||||||| |||||||||||||||| |  ||||||||| ||||||||| |||||    
T  20512882 cattttcatcttataaacatcaaacttcttcatcttcttcatttaacatgtaatctccatatccttcgtttcataatcgaatcatattt 20512794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 4115444 - 4115350
Alignment:
Q  126 aattaccatttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatcttatttat 222  Q
    ||||||||||||||||| || ||||| ||| |||   ||| | |||||||||||||  |||||| ||||| | ||| |||||| |||||||||||||    
T  4115444 aattaccatttttatcttaagaacatgaaacttctccatctcattcattcaacatg--atctccgtttatcttgttccaaaattgaatcttatttat 4115350  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 25062434 - 25062475
Alignment:
Q  60 aggggttaattactctcaattcatcaaggaaaaatgtaggct 101  Q
    |||||| |||||| ||||||||||||||||| ||||||||||    
T  25062434 aggggtaaattaccctcaattcatcaaggaataatgtaggct 25062475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 34891421 - 34891646
Alignment:
Q  1 cttcatttaatatgagatttacatctttttcgttccaaaatctaatcgtgtttgtcatcaggggttaattactctcaattcatcaaggaaaaatgtaggc 100  Q
    |||||||||| ||| ||| || |||| |||| |||| ||||| ||| || |||||||| |||||| |||||| | || |||||||||||| ||| |||||    
T  34891421 cttcatttaacatgtgatctagatctctttcattcccaaatcgaattgtatttgtcatgaggggtaaattaccc-cagttcatcaaggaagaatataggc 34891519  T
Q  101 tcgtcgatata-tttttcgttact-tcaattaccatttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttc 198  Q
    ||  ||||||  |||||  ||||| | | ||| |||||| ||||||| ||||||||| ||| | ||| |||||||||||||||| ||||||||||  |||    
T  34891520 tcaccgatatggttttttcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctccatttgcttc 34891619  T
Q  199 gtttcaaaatcgaatcttatttattat 225  Q
    |||  ||||| ||||||||||| ||||    
T  34891620 gttataaaattgaatcttatttgttat 34891646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 42012690 - 42012784
Alignment:
Q  2 ttcatttaatatgagatttacatctttttcgttccaaaatctaatcgtgtttgtcatcaggggttaattactctcaattcatcaaggaaaaatgta 97  Q
    ||||||||| ||| ||||||||||||||||||||||||||| |||| | | |||||| |||| | |||||| | ||||| ||||||||||||||||    
T  42012690 ttcatttaagatgtgatttacatctttttcgttccaaaatcgaatcatatatgtcatgagggataaattac-cccaattaatcaaggaaaaatgta 42012784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 32138949 - 32138882
Alignment:
Q  124 tcaattaccatttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccat 191  Q
    |||||||||||||| |||| || ||||||||||||| | ||| ||||| |||||||||||||||||||    
T  32138949 tcaattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgtaatctccat 32138882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 3191620 - 3191534
Alignment:
Q  134 tttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatcttattt 220  Q
    |||| ||||||||||||||||| ||| | ||| |||| ||||||||||| |||| || ||| ||| ||| ||||| |||| ||||||    
T  3191620 ttttcatctcaaaaacatcaaagttcttcatctcctttattcaacatgtgatcttcagttacttcattttaaaattgaattttattt 3191534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7113804 - 7113579
Alignment:
Q  1 cttcatttaatatgagatttacatctttttcgttccaaaatctaatcgtgtttgtcatcaggggttaattactc-tcaattcatcaaggaaaaatgtagg 99  Q
    |||||||||| ||| ||||||||||| ||| |||||| |||  |||||| |||| |||||| ||| |||||| | |||||||||||||||||||||||||    
T  7113804 cttcatttaagatgtgatttacatctcttttgttccataattgaatcgtatttgacatcagcggtaaattacccctcaattcatcaaggaaaaatgtagg 7113705  T
Q  100 ctcgtcgata---tatttttcgttacttcaattaccatttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatt 196  Q
     |||||| ||   |||||||  |  | ||||||| |||||| ||||||| || || ||| ||| | ||| | |||||||||| ||| || | ||||||      
T  7113704 ttcgtcggtatagtattttttttaccatcaattatcattttcatctcaagaatattaaacttcttcatctcattcattcaacgtgtgattttcatttaca 7113605  T
Q  197 tcgtttcaaaatcgaatcttatttat 222  Q
    ||||| ||||||  ||||||||||||    
T  7113604 tcgttccaaaattaaatcttatttat 7113579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 37077780 - 37077875
Alignment:
Q  132 catttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatcttatttattatca 227  Q
    |||||| ||||||||||||||||| ||| ||||    |||||||||||||| ||||| || |  ||| ||||||||| ||||||||||||||||||    
T  37077780 cattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtgatctctatatcattcatttcaaaattgaatcttatttattatca 37077875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 5205587 - 5205511
Alignment:
Q  138 tatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatc 214  Q
    |||||||||||||||||| ||  | ||| |||| ||| ||||||| |||||||| |||||||||| | |||||||||    
T  5205587 tatctcaaaaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcgttttataatcgaatc 5205511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 2243375 - 2243312
Alignment:
Q  128 ttaccatttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccat 191  Q
    |||||||||| ||||||| ||||||||| ||| | ||  |||||||||||||||| ||||||||    
T  2243375 ttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccat 2243312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 973131 - 973221
Alignment:
Q  132 catttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatcttatttat 222  Q
    |||||||||||||||||||| ||| ||| | ||| |||| ||||||||||| |||| ||| |  ||| || |||||| ||||| |||||||    
T  973131 catttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctcattcattacaaaattgaatcatatttat 973221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 14138557 - 14138655
Alignment:
Q  124 tcaattaccatttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatcttatttat 222  Q
    |||||||||||||| |||| || || |||||| ||  | ||| | ||||||||||||||||||| ||| | ||| |||| ||||||||||  |||||||    
T  14138557 tcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgtaatcttcatcttttttgtttgaaaatcgaattatatttat 14138655  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 2909854 - 2909945
Alignment:
Q  144 aaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatcttatttattatcaggataact 235  Q
    |||||||||||| ||| | ||| ||||||||||||||||||||| |||||| ||| ||  ||||| ||||||||||||| || |||||||||    
T  2909854 aaaaacatcaaacttcttcatctccttcattcaacatgtaatctacatttacttcattctaaaattgaatcttatttatcattaggataact 2909945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 16576260 - 16576350
Alignment:
Q  124 tcaattaccatttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatc 214  Q
    ||||||||||||||  |||||| ||||||||| ||| | ||| |||||||||||||||| |||||| | |  |||||| || |||||||||    
T  16576260 tcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 16576350  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 34176739 - 34176812
Alignment:
Q  147 aacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatcttattt 220  Q
    ||||||||||||| | ||| |||||||| ||||| | |||| ||| | |||||||||| ||||||||| |||||    
T  34176739 aacatcaaaattcttcatctccttcatttaacatatgatcttcatctctttcgtttcataatcgaatcatattt 34176812  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 39341145 - 39341309
Alignment:
Q  60 aggggttaattactctcaattcatcaaggaaaaatgtaggctcgtcgatata-tttttcgttact-tcaattaccatttttatctcaaaaacatcaaaat 157  Q
    |||||| |||||  ||||||| ||||||||||||| || ||||  ||||||| |||||  ||||| | | |||||||||| |||| || || |||||| |    
T  39341145 aggggtaaattatcctcaattaatcaaggaaaaatatatgctcaccgatataattttttcttactatgagttaccattttcatcttaagaatatcaaact 39341244  T
Q  158 tcgtaatccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatcttatttat 222  Q
    |  | ||| |||||||||||||||  ||||||||||| ||||||  ||||| |||||||||||||    
T  39341245 ttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatcttatttat 39341309  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 68113 - 68207
Alignment:
Q  128 ttaccatttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatcttatttat 222  Q
    ||||||||||||| |||| |||||| || ||| | ||| |||||||| ||||||| |||||||| | ||||||| |||||||||||  |||||||    
T  68113 ttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatctttttcgttccaaaatcgaatgatatttat 68207  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 46080983 - 46081049
Alignment:
Q  124 tcaattaccatttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctcca 190  Q
    |||||||||||||| ||||||| ||||| ||| ||| | ||| |||||| |||||||||||||||||    
T  46080983 tcaattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacatgtaatctcca 46081049  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 7997301 - 7997156
Alignment:
Q  77 aattcatcaaggaaaaatgtaggctcgtcgatat-atttttcgttact-tcaattaccatttttatctcaaaaacatcaaaattcgtaatccccttcatt 174  Q
    ||||||||||| ||||||||||  || ||||||| ||||||  ||| | |||||||||||||| ||||| | || ||| || ||| | ||  | ||||||    
T  7997301 aattcatcaagaaaaaatgtagattcatcgatatgattttttcttagtatcaattaccattttcatctctataatatctaacttcttcatttctttcatt 7997202  T
Q  175 caacatgtaatctccatttatttcgtttcaaaatcgaatcttattt 220  Q
    |||||||| || |||||||| || ||||||||||  ||||||||||    
T  7997201 caacatgtcatatccatttactttgtttcaaaattaaatcttattt 7997156  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 44342152 - 44341997
Alignment:
Q  67 aattactctcaattcatcaaggaaaaatgtaggctcgtcgatata-tttttcgttacttcaattaccatttttatctcaaaaacatcaaaattcgtaatc 165  Q
    ||||| || |||||||||||||||||||||||||||  ||||||| |||||  |||||   ||||||||||| || || ||||||||||| ||| | ||     
T  44342152 aattattcccaattcatcaaggaaaaatgtaggctcaccgatatagttttttcttactatcattaccattttcatatc-aaaacatcaaacttcttcatt 44342054  T
Q  166 cccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatcttatttat 222  Q
     |  ||||||||||  | |||| |||||| ||||||| |||||  ||| ||||||||    
T  44342053 gcaatcattcaacaaatgatcttcatttacttcgttttaaaattaaattttatttat 44341997  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 35956997 - 35957026
Alignment:
Q  126 aattaccatttttatctcaaaaacatcaaa 155  Q
    ||||||||||||||||||||||||||||||    
T  35956997 aattaccatttttatctcaaaaacatcaaa 35957026  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 219
Target Start/End: Original strand, 23577167 - 23577258
Alignment:
Q  128 ttaccatttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatcttatt 219  Q
    |||||||||| ||||||||||||||| | |||   ||| |||||||||||||| | || | |||||| ||||||||||||| |||| |||||    
T  23577167 ttaccattttcatctcaaaaacatcatacttctccatctccttcattcaacatctgatatacatttacttcgtttcaaaattgaattttatt 23577258  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 32342612 - 32342710
Alignment:
Q  124 tcaattaccatttttatctcaaaaacatcaaaattcgtaatccccttcattcaacatgtaatctccatttatttcgtttcaaaatcgaatcttatttat 222  Q
    ||||||| |||||| ||||||||||||||||| ||  | ||| | |||||||||||||  ||||| |||| ||||||| || |||| |||| |||||||    
T  32342612 tcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacatgcgatctctatttttttcgttccagaatcaaatcatatttat 32342710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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