View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_17 (Length: 419)
Name: NF3687_low_17
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 10 - 402
Target Start/End: Complemental strand, 32572497 - 32572105
Alignment:
| Q |
10 |
attattcttgggaccgggttcatgcatgtactccctgattcgtacgagatgttgtggagtgattgtttggatgagaaaccatggcgcgagtttccctttt |
109 |
Q |
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| T |
32572497 |
attattcttgggaccgggttcatgcatgtactccctgattcgtacgagatgttgtggagtgattgtttagatgagaaaccatggcacgagtttccctttt |
32572398 |
T |
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| Q |
110 |
cgggacttgtggctatgttctccgcggtggtcacaatgatggtcgattctatagctactagttattatagtaagaagggtaagagcggagttgtgattcc |
209 |
Q |
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| T |
32572397 |
cgggacttgtggctatgttctccgcggtggtcacaatgatggtcgattctatagctactagttattatagtaagaagggtaagagcggagttgtgattcc |
32572298 |
T |
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| Q |
210 |
agagagccatggtggagatgatcaagagattggacattcacatggtggtcaccatcatattcataatgggttcaagacagatgaaagtgacgagccacaa |
309 |
Q |
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| T |
32572297 |
agagagccatggtggagatgatcaagagattggacattcacatggtggtcaccatcatattcataatgggttcaagacagaagaaagtgacgagccacaa |
32572198 |
T |
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| Q |
310 |
cttctacgttatcgtgtagtggtcatggtaatatatatacttcttctatatgatattaattttcaatgcaaaataatctgttagaaatataat |
402 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32572197 |
cttctacgttatcgcgtagtggtcatggtaatatatatacttcttctatatgatattaattttcaatgcaaaataatctgttagaaatataat |
32572105 |
T |
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