View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_18 (Length: 406)
Name: NF3687_low_18
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 89 - 403
Target Start/End: Original strand, 43021927 - 43022242
Alignment:
| Q |
89 |
gcaaagttaataaataaaatgacaatgccctctacagaaaatccacaaagagcgcatagttatatacacattctacattaccttcgtcggtggggaccaa |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021927 |
gcaaagttaataaataaaatgacaatgccctctacagaaaatccacaaagagcgcatagttatatacacattctacattaccttcgtcggtggggaccaa |
43022026 |
T |
|
| Q |
189 |
cttttgctgcacttcttcctcaaccagtttagcactcccttgggaggctggttccttcacactcatagactcatgagtagcttcagatacaactgcagct |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43022027 |
cttttgctgcacttcttcctcaaccagtttagcactcccttgggaggctggttccttcacactcatagactcatgagtagcttcagatacaactgcagct |
43022126 |
T |
|
| Q |
289 |
ctaggcatctttacttgctctgatacctg-tgtgtagcagagacatcctttatctccgcagctatttcctgtatatttgtcattccttcattaacttgtg |
387 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43022127 |
ctaggcatctttacttgctctgatacctgctgtgtagcagagacatcctttatctcagcagctatttcctgtatatttgtcattccttcattaacttgtg |
43022226 |
T |
|
| Q |
388 |
aaacctttgcttctcc |
403 |
Q |
| |
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||||||||| |||||| |
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| T |
43022227 |
aaacctttggttctcc |
43022242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 89 - 403
Target Start/End: Original strand, 42811541 - 42811862
Alignment:
| Q |
89 |
gcaaagttaataaataaaatgacaatgccctctacagaaaatccacaaagagcgcatagttatatacacattctacattaccttcgtcggtggggaccaa |
188 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42811541 |
gcaaagttaataaataaaatgacaatgccctcaacagaagatcaacaaagaacgcatggttatatacacattctacattacctccgtcggtggggaccaa |
42811640 |
T |
|
| Q |
189 |
cttttgctgcacttcttcctcaaccagtttagcactcccttgggaggct------ggttccttcacactcatagactcatgagtagcttcagatacaact |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
42811641 |
cttttgctgcacttcttcctcaaccagtttagcactcccttgggaggctggttccggttcctttacactcatagactcatgagtaacttcagatacaact |
42811740 |
T |
|
| Q |
283 |
gcagctctaggcatctttacttgctctgatacctg-tgtgtagcagagacatcctttatctccgcagctatttcctgtatatttgtcattccttcattaa |
381 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| |||| ||| |||||||||||||||||| |||||||||||||| |
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| T |
42811741 |
gcagctctagggatctttacttgctctgatacctgctgtgtagcagagacctcctttctctcggcaactatttcctgtatatttgccattccttcattaa |
42811840 |
T |
|
| Q |
382 |
cttgtgaaacctttgcttctcc |
403 |
Q |
| |
|
||||||||||||||| |||||| |
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| T |
42811841 |
cttgtgaaacctttggttctcc |
42811862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 89 - 366
Target Start/End: Original strand, 35060623 - 35060901
Alignment:
| Q |
89 |
gcaaagttaataaataaaatgacaatgccctctacagaaaatccacaaagagcgcatagttatatacacattctacattaccttcgtcggtggggaccaa |
188 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35060623 |
gcaaagttaataaataaaatgacaatgccctcaacagaaaatgcacaaagaacgcatagttatatacacattctacattacctccgtcggtggggaccaa |
35060722 |
T |
|
| Q |
189 |
cttttgctgcacttcttcctcaaccagtttagcactcccttgggaggctggttccttcacactcatagactcatgagtagcttcagatacaactgcagct |
288 |
Q |
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||||| |||||||||||||||||||| | |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35060723 |
cttttcttgcacttcttcctcaaccagctcagcactcccttgggagactggttccttcacattcatagactcatgagtagcttcagatacaactgcagct |
35060822 |
T |
|
| Q |
289 |
ctaggcatctttacttgctctgatacctg-tgtgtagcagagacatcctttatctccgcagctatttcctgtatatttg |
366 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||| |||||| |||| |||||||||||||||||||||| |
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| T |
35060823 |
ctagggatctttacttgctctgatacctgctgtgtagcagagacctcctttttctcagcagctatttcctgtatatttg |
35060901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 43021857 - 43021900
Alignment:
| Q |
19 |
agaactagaaaaaacagcagatttaccatttgcaggcatatgga |
62 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021857 |
agaactagaaaaaacagcagatttaccatttgcaggcatatgga |
43021900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 35060553 - 35060592
Alignment:
| Q |
19 |
agaactagaaaaaacagcagatttaccatttgcaggcata |
58 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
35060553 |
agaactagaaaaaacagcagatttaccatttgcaggcata |
35060592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 42811471 - 42811510
Alignment:
| Q |
19 |
agaactagaaaaaacagcagatttaccatttgcaggcata |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
42811471 |
agaactagaaaaaacagcagatttaccatttgcaggcata |
42811510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 160 - 279
Target Start/End: Complemental strand, 41565839 - 41565720
Alignment:
| Q |
160 |
tctacattaccttcgtcggtggggaccaacttttgctgcacttcttcctcaaccagtttagcactcccttgggaggctggttccttcacactcatagact |
259 |
Q |
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|||||||||||| | || || || ||||||||||||||||||||||||||||| | | ||||||||||| || ||||||||||||||||| |||| | |
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| T |
41565839 |
tctacattacctgcttcagtaggaaccaacttttgctgcacttcttcctcaacaacctgggcactcccttgagacactggttccttcacactcttagatt |
41565740 |
T |
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| Q |
260 |
catgagtagcttcagataca |
279 |
Q |
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|||||||||||||||||||| |
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| T |
41565739 |
catgagtagcttcagataca |
41565720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 403
Target Start/End: Original strand, 21827551 - 21827606
Alignment:
| Q |
348 |
gctatttcctgtatatttgtcattccttcattaacttgtgaaacctttgcttctcc |
403 |
Q |
| |
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|||||||| |||||||| ||||||| ||||||||| |||||||||||| |||||| |
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| T |
21827551 |
gctatttcttgtatattcatcattccgtcattaactagtgaaacctttggttctcc |
21827606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 403
Target Start/End: Original strand, 39603265 - 39603350
Alignment:
| Q |
318 |
tgtgtagcagagacatcctttatctccgcagctatttcctgtatatttgtcattccttcattaacttgtgaaacctttgcttctcc |
403 |
Q |
| |
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||||||||||||||| ||||| |||| | |||||||| | |||||| ||||| ||||||||| |||||||||||| |||||| |
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| T |
39603265 |
tgtgtagcagagacaacctttctctcatctgctatttcttttatattcatcattttgtcattaactagtgaaacctttggttctcc |
39603350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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