View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3687_low_2 (Length: 608)

Name: NF3687_low_2
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3687_low_2
NF3687_low_2
[»] chr2 (4 HSPs)
chr2 (21-346)||(14658540-14658863)
chr2 (349-442)||(45336618-45336708)
chr2 (362-445)||(14662651-14662731)
chr2 (526-589)||(14662413-14662476)
[»] chr5 (1 HSPs)
chr5 (349-442)||(32798365-32798455)
[»] chr8 (1 HSPs)
chr8 (349-442)||(44732202-44732292)
[»] chr7 (2 HSPs)
chr7 (349-445)||(13110845-13110939)
chr7 (529-589)||(13111118-13111178)
[»] chr3 (4 HSPs)
chr3 (524-589)||(48025108-48025173)
chr3 (524-589)||(48027288-48027353)
chr3 (526-577)||(48023999-48024050)
chr3 (524-586)||(48024548-48024610)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 346
Target Start/End: Complemental strand, 14658863 - 14658540
Alignment:
Q  21 cttataagtctaacttcttatgtgaaactctccaattatatgtgacccaagagtaaccagcagcaacgtaaatgtatttacactgaaatcaattttgtag 120  Q
    |||| |||||| |||||||||||||||||||||||| ||  ||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||    
T  14658863 cttacaagtcttacttcttatgtgaaactctccaataat--gtgacccaagagtaaccagcaacaatgtaaatgtatttatactgaaatcaattttgtag 14658766  T
Q  121 aatcaagatcatgtaaaatcaaatttataaacatacataatggtttttagctaaaaggaatatcaattaggtcagaagtaacttagtgctatgatcatcg 220  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||    
T  14658765 aatcaagatcatgcaaaatcaaatttataagcatacataatgatttttagctaaaaagaatatcaattaggtcaaaagtaacttagtactatgatcatcg 14658666  T
Q  221 aatatgtgccctttgtttctaacaacactggttggagaagtgtgttgacctcaaaaagagaaggaaaaaataataataacatgttgtcatgatattccga 320  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||    
T  14658665 aatatgtgccctttgtttctaacaacactggttggagaaatgtgttgacctcaaaaagagaaggaaaaaataataataacatgctgtcatgaaattctga 14658566  T
Q  321 ccatggtgggagttctagaaaaatca 346  Q
    ||| ||||| | ||||||||||||||    
T  14658565 ccacggtggaaattctagaaaaatca 14658540  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 349 - 442
Target Start/End: Complemental strand, 45336708 - 45336618
Alignment:
Q  349 gttttcttgctggttttctctcaccctcaaaattttacactggttttctaacctcacagaccccgttaagatcaatatggggctcttgatacca 442  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  45336708 gttttcttgctggttttctctcaccctcaaagttttacactagttttctaacctcacaga-cccgttaagatca--atggggctcttgatacca 45336618  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 362 - 445
Target Start/End: Complemental strand, 14662731 - 14662651
Alignment:
Q  362 ttttctctcaccctcaaaattttacactggttttctaacctcacagaccccgttaagatcaatatggggctcttgataccatgt 445  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||    
T  14662731 ttttctctcaccctcaaaattttacactgattttctaacctcataga-cccgttaagatcaata--gggctcttgataccatgt 14662651  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 526 - 589
Target Start/End: Complemental strand, 14662476 - 14662413
Alignment:
Q  526 gaacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagac 589  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  14662476 gaacataagatctgcacgaaatctactcttaagcactagtcattattacctagcaacaatagac 14662413  T

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Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 349 - 442
Target Start/End: Complemental strand, 32798455 - 32798365
Alignment:
Q  349 gttttcttgctggttttctctcaccctcaaaattttacactggttttctaacctcacagaccccgttaagatcaatatggggctcttgatacca 442  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  32798455 gttttcttgctggttttctctcaccctcaaagttttacactagttttctaacctcacaga-cccgttaagatca--atggggctcttgatacca 32798365  T

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Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 349 - 442
Target Start/End: Complemental strand, 44732292 - 44732202
Alignment:
Q  349 gttttcttgctggttttctctcaccctcaaaattttacactggttttctaacctcacagaccccgttaagatcaatatggggctcttgatacca 442  Q
    ||||||||||||||||||||||||||||||| || || ||| |||||||| ||||||||| |||||||||||||  ||||||||||||||||||    
T  44732292 gttttcttgctggttttctctcaccctcaaagttctatactagttttctaccctcacaga-cccgttaagatca--atggggctcttgatacca 44732202  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 349 - 445
Target Start/End: Original strand, 13110845 - 13110939
Alignment:
Q  349 gttttcttgctggttttctctcaccctcaaa-attttacactggttttctaacctcacagaccccgttaagatcaatatggggctcttgataccatgt 445  Q
    ||||||||||||||||||||||||||| |||  ||||||||| ||||||||| ||||||||  | |||||||||||||  || |||||||||||||||    
T  13110845 gttttcttgctggttttctctcaccctaaaattttttacactagttttctaatctcacaga-tcagttaagatcaata--ggactcttgataccatgt 13110939  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 529 - 589
Target Start/End: Original strand, 13111118 - 13111178
Alignment:
Q  529 cataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagac 589  Q
    |||||||| ||||| ||||||||||||||||||  ||||| ||||||||  ||||||||||    
T  13111118 cataaaatttgcactaaatctactcttaagcactagtcatcattacctaagaacaatagac 13111178  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 524 - 589
Target Start/End: Original strand, 48025108 - 48025173
Alignment:
Q  524 aggaacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagac 589  Q
    ||||||||||||||| ||| ||||||||||||||||||  ||||| ||||||||  ||||||||||    
T  48025108 aggaacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagac 48025173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 524 - 589
Target Start/End: Original strand, 48027288 - 48027353
Alignment:
Q  524 aggaacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaatagac 589  Q
    ||||||||||||||| ||| ||||||||||||||||||  ||||| ||||||||  ||||||||||    
T  48027288 aggaacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagac 48027353  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 526 - 577
Target Start/End: Original strand, 48023999 - 48024050
Alignment:
Q  526 gaacataaaatctgcacgaaatctactcttaagcaccggtcattattaccta 577  Q
    ||||||||||||||||| ||||||||||||||||||  ||||| ||||||||    
T  48023999 gaacataaaatctgcactaaatctactcttaagcactagtcatcattaccta 48024050  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 524 - 586
Target Start/End: Original strand, 48024548 - 48024610
Alignment:
Q  524 aggaacataaaatctgcacgaaatctactcttaagcaccggtcattattacctagcaacaata 586  Q
    ||||||||||||||| ||| ||||||||| ||||||||  ||||| ||||||||  |||||||    
T  48024548 aggaacataaaatctacactaaatctactattaagcactagtcatcattacctaagaacaata 48024610  T

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