View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3687_low_21 (Length: 387)

Name: NF3687_low_21
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3687_low_21
NF3687_low_21
[»] chr8 (2 HSPs)
chr8 (20-374)||(9003273-9003629)
chr8 (197-280)||(32225522-32225605)
[»] chr5 (2 HSPs)
chr5 (199-280)||(3575526-3575607)
chr5 (197-279)||(8450197-8450279)
[»] chr4 (2 HSPs)
chr4 (203-279)||(12276670-12276746)
chr4 (200-278)||(42048509-42048587)
[»] chr2 (2 HSPs)
chr2 (199-285)||(26496886-26496972)
chr2 (111-139)||(17775541-17775569)


Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 9003629 - 9003273
Alignment:
Q  20 atcatattcgacacctaagatttcgttgcaataaacaa--caatttagccaatttattttctatataaatatatacataagtatcattcaacaaagtgct 117  Q
    |||||||||||||||||| ||||||| |||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  9003629 atcatattcgacacctaaaatttcgtcgcaataaacaaaacaatttaaccaatttattttctatataaatatatacataagtatcattcagcgaagtgct 9003530  T
Q  118 tgattaagttgtttatccagacgtatatttgtatcaaatacgtaccagattggtgtcattggtggtgttatcgtcgagtctatactcatgcatgatccaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003529 tgattaagttgtttatccagacgtatatttgtatcaaatacttaccagattggtgtcattggtggtgttatcgtcgagtctatactcatgcatgatccaa 9003430  T
Q  218 tcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaatcctttttccattactatatataactttgtcacgaccgg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003429 tcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaatcctttttccattactatatataactttgtcacgaccgg 9003330  T
Q  318 tggctttccagaaccctgcagccgtagcgcgattggttcttgttccggttggatact 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9003329 tggctttccagaaccctgcagccgtagcgcgattggttcttgttccggttggatact 9003273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 280
Target Start/End: Original strand, 32225522 - 32225605
Alignment:
Q  197 ctatactcatgcatgatccaatcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaatc 280  Q
    ||||| ||||||||||||||||||| ||| || |||| ||| || |  |||||||||||||| || ||||| ||||||||||||    
T  32225522 ctatattcatgcatgatccaatcagttttctgtccattaggtgctcttcctttgtagaaaacgagtgtcttcctcattccaatc 32225605  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 3575607 - 3575526
Alignment:
Q  199 atactcatgcatgatccaatcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaatc 280  Q
    |||||||||||||||||||||||||||||| |||| ||| || |  ||||| ||||| ||||||||||||||||||||||||    
T  3575607 atactcatgcatgatccaatcagatttttgaccattaggtgctcttcctttatagaagacaagagtctttctcattccaatc 3575526  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 8450279 - 8450197
Alignment:
Q  197 ctatactcatgcatgatccaatcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaat 279  Q
    ||||| ||||||||||||||||||||||| || |||| ||| || |  ||||||||||||||||| ||||| ||||| |||||    
T  8450279 ctatattcatgcatgatccaatcagatttctgtccattaggggctcttcctttgtagaaaacaagggtcttcctcatcccaat 8450197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 12276746 - 12276670
Alignment:
Q  203 tcatgcatgatccaatcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaat 279  Q
    |||||||| ||||||||||  ||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||    
T  12276746 tcatgcataatccaatcagtcttttgtccatgaggagctctacctttgtagaacacaagagtctttctcattccaat 12276670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 42048509 - 42048587
Alignment:
Q  200 tactcatgcatgatccaatcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaa 278  Q
    |||||||||||||||||||||||||| || ||||  || ||||| |||||||| || || |||||||||||||| ||||    
T  42048509 tactcatgcatgatccaatcagatttctgtccatttggggcacgtcctttgtaaaacactagagtctttctcatcccaa 42048587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 26496972 - 26496886
Alignment:
Q  199 atactcatgcatgatccaatcagatttttggccatgaggagcacgacctttgtagaaaacaagagtctttctcattccaatcctttt 285  Q
    ||||||||||||||||||||||| ||| || |||||||||||||| ||  ||||||| || |  || || |||||||||||||||||    
T  26496972 atactcatgcatgatccaatcagttttgtgaccatgaggagcacgtccagtgtagaacactaaggttttcctcattccaatcctttt 26496886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 139
Target Start/End: Original strand, 17775541 - 17775569
Alignment:
Q  111 aagtgcttgattaagttgtttatccagac 139  Q
    |||||||||||||||||||||||||||||    
T  17775541 aagtgcttgattaagttgtttatccagac 17775569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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