View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_23 (Length: 375)
Name: NF3687_low_23
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 24 - 362
Target Start/End: Original strand, 7711429 - 7711767
Alignment:
| Q |
24 |
tgcttcatagtatgaaactctttattgtgcaatcaatgactgtatgtaatttgtatcgtaatatttaaacacaacttgcactcgttaatccaaagtattg |
123 |
Q |
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| T |
7711429 |
tgcttcatagtatgaaactctttattgtgcaatcaatgactataagtaatttgtatcgtaatatttaaacacaacttgcactcgttaatccaaagtattg |
7711528 |
T |
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| Q |
124 |
cataatagaatactacgacatccacttcattgtcagagatgtaggcacaattgatcgagttctatgatcacttgttcaattgttgtgttcttgcgcgttt |
223 |
Q |
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| T |
7711529 |
cataatagaatactacaacatccacttcattgtcagagatgtaggcacaattgatcgagttctatgatcactcgttcaattgttgtgttcttgtgcgttt |
7711628 |
T |
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| Q |
224 |
atttatctgtttactttatagccgattttagagtatgactgtcaaacttactctctctcaaactgttttcaggtatcattttctgtccagtaatatgttt |
323 |
Q |
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| T |
7711629 |
atttatctgtttattttatagccgattttagagtatgactgtcaaacttactctctctcaaactgttttcaggtatcattttctgtccagtaatatgttt |
7711728 |
T |
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| Q |
324 |
aatcatgacaatcggaaactcagccatcatacttggtct |
362 |
Q |
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| T |
7711729 |
aatcatgacaatcggaaactcagccatcatacttggtct |
7711767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 22622603 - 22622561
Alignment:
| Q |
199 |
tcaattgttgtgttcttgcgcgtttatttatctgtttacttta |
241 |
Q |
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| T |
22622603 |
tcaattgttgtgtttttgtgcgtttatttatatgtttacttta |
22622561 |
T |
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