View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_24 (Length: 373)
Name: NF3687_low_24
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 144 - 363
Target Start/End: Original strand, 156353 - 156572
Alignment:
| Q |
144 |
acaacaactaaggagtcaacatgcacctcaataaatcgaaattgcaaccttctggcatacatgagcccttccaacactccccacaattctgccaaataag |
243 |
Q |
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| T |
156353 |
acaacaactaaggagtcaacatgcacctcaataaatcgaaattgcaaccttctggcatacatgtgcccttccaacactccccacaattctgccaaataag |
156452 |
T |
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| Q |
244 |
caccttctattccaatatacttcaatatacttggagaaacctcacaaccactcaccattgcttcctctaatgatgccaccacaaccaatatgaccaccat |
343 |
Q |
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| T |
156453 |
caccttctattccaatatacttcaatatacttggagaaacctcacaaccactcaccattgcttcctctaatgatgccaccacaaccaatatgaccaccat |
156552 |
T |
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| Q |
344 |
ctctacaggatccatctgtg |
363 |
Q |
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|||||||||||||||||||| |
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| T |
156553 |
ctctacaggatccatctgtg |
156572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 156131 - 156217
Alignment:
| Q |
44 |
caataaaagactaatattgctaggacatacatcaaagaatcagatccccgaatccatcgaacaatcatagttagctaaaagcgtatg |
130 |
Q |
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| T |
156131 |
caatagaagactaatattgctatgacatacatcaaagaatcagatccccgaatccatcgaacaatcatagttagctaaaagcgtatg |
156217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 156046 - 156089
Alignment:
| Q |
1 |
ttatatcgatgagggcctaagcccaaaaagaaagagattacaac |
44 |
Q |
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| T |
156046 |
ttatatcgatgagggcctaagcccaaaaagaaagagattacaac |
156089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 31976581 - 31976695
Alignment:
| Q |
144 |
acaacaactaaggagtcaacatgcacctcaataaatcgaaattgcaaccttctggcatacatgagcccttccaacactccccacaattctgccaaataag |
243 |
Q |
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||||||| |||| |||||||||| | ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || |||||||||| |||| |
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| T |
31976581 |
acaacaagtaagaagtcaacatgtaactcaataaatcgaaattacaaccttctgacatacatgagcccttccaacactccacataattctgccagataaa |
31976680 |
T |
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| Q |
244 |
caccttctattccaa |
258 |
Q |
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|| || ||||||||| |
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| T |
31976681 |
catctcctattccaa |
31976695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 37054066 - 37054140
Alignment:
| Q |
144 |
acaacaactaaggagtcaacatgcacctcaataaatcgaaattgcaaccttctggca-tacatgagcccttccaa |
217 |
Q |
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|||| |||||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||| ||||||||| |
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| T |
37054066 |
acaataactaaggagtcaacatgcaactcaataaatcaaaattgcaaccttctaacattacatgaccccttccaa |
37054140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 31976373 - 31976445
Alignment:
| Q |
50 |
aagactaatattgctaggacatacatcaaagaatcagatccccgaatccatcgaacaatcatagttagctaaa |
122 |
Q |
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|||||||||||| ||| ||||||||||||| || || ||||| || ||||||||||||| ||| ||||||||| |
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| T |
31976373 |
aagactaatattactacgacatacatcaaaaaaacatatccctgactccatcgaacaattataattagctaaa |
31976445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31976300 - 31976343
Alignment:
| Q |
1 |
ttatatcgatgagggcctaagcccaaaaagaaagagattacaac |
44 |
Q |
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||||| ||||||| | |||||||||||||||||||||||||||| |
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| T |
31976300 |
ttataacgatgagagtctaagcccaaaaagaaagagattacaac |
31976343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 2909283 - 2909370
Alignment:
| Q |
152 |
taaggagtcaacatgcacctcaataaatcgaaattgcaaccttctggcatacatgagcccttccaacactccccacaattctgccaaa |
239 |
Q |
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||||||||||||||||| ||||||||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||| ||||| |
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| T |
2909283 |
taaggagtcaacatgcaactcaataaaccaaaattgcaaccttctagcatacatgagatcttccaacactccccataattctaccaaa |
2909370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 2909069 - 2909135
Alignment:
| Q |
51 |
agactaatattgctaggacatacatcaaagaatcagatccccgaatccatcgaacaatcatagttagc |
118 |
Q |
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|||||||||||||||||| | |||||||| || |||| |||| |||||||||||||| |||||||||| |
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| T |
2909069 |
agactaatattgctaggatagacatcaaaaaa-cagacccccaaatccatcgaacaaccatagttagc |
2909135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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