View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_26 (Length: 364)
Name: NF3687_low_26
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_26 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 3 - 364
Target Start/End: Complemental strand, 40137192 - 40136831
Alignment:
| Q |
3 |
atgtgacacgatttatttgcagatcattacaatctcatggatactaggttttggaatcattagtatcaatgtgtactacctcagtactgcctttgtgaag |
102 |
Q |
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| T |
40137192 |
atgtgacacgatttatttgcagatcattacaatctcatggatactaggttttggaatcattagtatcaatgtgtactacctcagtactgcctttgtgaag |
40137093 |
T |
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| Q |
103 |
tggataatacatagtagtctaccaaaggtggcaaatgtgttcattgggattatagtgtttcctctaatggcaatttatattgcctcagttatctacctta |
202 |
Q |
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| T |
40137092 |
tggataatacatagtagtctaccaaaggtggcaaatgtgttcattgggattatagtgtttcctctaatggcaatttatattgcctcagttatctacctta |
40136993 |
T |
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| Q |
203 |
ccttcagaaaagacaatgttgagatgttcatcgagacgaaaaatgatacagtaatgcaaaaccaagtggaaaaaggaattgtggataatggtcaattaga |
302 |
Q |
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| T |
40136992 |
ccttcagaaaagacactgttgagatgttcatcgagacgaaaaatgatacagtaatgcaaaaccaagtggaaaaaggaattgtggataatggtcaactaga |
40136893 |
T |
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| Q |
303 |
gttgagccatgttccttatagagaagatttagctgatataccactaccagaataaaggatcc |
364 |
Q |
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| T |
40136892 |
gttgagccatgttccttatagagaagatttagctgatataccactaccagaataaaggatcc |
40136831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 40125071 - 40124868
Alignment:
| Q |
20 |
tgcagatcattacaatctcatggatactaggttttggaatcattagtatcaatgtgtactacctcagtactgcctttgtgaagtggataatacatagtag |
119 |
Q |
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| T |
40125071 |
tgcagatcattatcatctcatggatactgggtttgggaatcattggaatcaatgtgtactacctcattactgcttttgtgggttggattattcacaacag |
40124972 |
T |
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| Q |
120 |
tctaccaaaggtggcaaatgtgttcattgggattatagtgtttcctctaatggcaatttatattgcctcagttatctaccttaccttcagaaaagacaat |
219 |
Q |
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||||||||||||||||||||||||||||||| | |||||||| |||||||||||| | ||||| | |||||||||||| || || ||||||||||||| | |
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| T |
40124971 |
tctaccaaaggtggcaaatgtgttcattgggctcatagtgttccctctaatggcactgtatatcgtctcagttatctatctaacattcagaaaagacact |
40124872 |
T |
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| Q |
220 |
gttg |
223 |
Q |
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|||| |
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| T |
40124871 |
gttg |
40124868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 40124801 - 40124750
Alignment:
| Q |
290 |
atggtcaattagagttgagccatgttccttatagagaagatttagctgatat |
341 |
Q |
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| T |
40124801 |
atggtcagttagagttgagttatactccttatagagaagatttagctgatat |
40124750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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