View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_27 (Length: 354)
Name: NF3687_low_27
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 20058485 - 20058134
Alignment:
| Q |
1 |
tttgtgcaaatcgcaattggcatccaaataacatcatgaatttcttagaatttttatgatgcatgc----tcatttcatagattagaaagcaaggaacat |
96 |
Q |
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| T |
20058485 |
tttgtgcaaatcgcaattggcatccaaataacatcatgaattgcttagaatttttatgatgcatgcatgctcatttcatagattagaaagcaaggaacat |
20058386 |
T |
|
| Q |
97 |
aacaattgacttaccatgtttggcatcattgacatgatctaaaatggaatttgaagaagagttttcattgctatcaagatttctaaccacgaccttatcc |
196 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20058385 |
aacaattgacttaccatgtttggcatcattcacatgatctaaaatggaagttgaagaagagttttcattgctatcaagatttctaaccacgaccttatcc |
20058286 |
T |
|
| Q |
197 |
acctttattctaagagcaataagaaaattaatttgcttgcttaactcctcagcttcctcaacaacttccttcatcatcttcttataaaatccattaacct |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20058285 |
acctttattctaagagcaataagaaaattaatttgcttgcttaactcctcagcttcctcaacaacttccttcatcatcttcttataaaatccattaacct |
20058186 |
T |
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| Q |
297 |
tgttaaactcaacatcaagtttcctgaaaaagataagatctctctctgctcc |
348 |
Q |
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| T |
20058185 |
tgttaaactcaacatcaagtttcctgaaaaagataagatctctctctgctcc |
20058134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 3039011 - 3039358
Alignment:
| Q |
1 |
tttgtgcaaatcgcaattggcatccaaataacatcatgaatttcttagaatttttatgatgcatgctcatttcatagattagaaagcaaggaacataaca |
100 |
Q |
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| T |
3039011 |
tttgtgccaaccgcaattggcatccaaataatatcatgaactgcatagaatttttatgatgcatgctattttcatagattaaaaagcaaggaacataaca |
3039110 |
T |
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| Q |
101 |
attgacttaccatgtttggcatcattgacatgatctaaaatggaatttgaagaagagttttcattgctatcaagatttctaaccacgaccttatccacct |
200 |
Q |
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| |||| ||||||||||||||||| | ||||||| | ||||||| ||||||||||||||||||||||||||||||||| || | |||||||| |||| |
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| T |
3039111 |
aatgacgtaccatgtttggcatcacttacatgatgcataatggaagttgaagaagagttttcattgctatcaagatttccaaacctaaccttatcaacct |
3039210 |
T |
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| Q |
201 |
ttattctaagagcaataagaaaattaatttgcttgcttaactcctcagcttcctcaacaacttccttcatcatcttcttataaaatccattaaccttgtt |
300 |
Q |
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| T |
3039211 |
ttattctaagagcaataagaaaattaatttgcttgcttaactcctcagcttcctcaacaacttccttcatcatcttcttataaaatccattaaccttgtt |
3039310 |
T |
|
| Q |
301 |
aaactcaacatcaagtttcctgaaaaagataagatctctctctgctcc |
348 |
Q |
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| T |
3039311 |
aaactcaaaatcaagtttcctgaaaaagacaagatctctttctgctcc |
3039358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 33 - 348
Target Start/End: Original strand, 3020724 - 3021036
Alignment:
| Q |
33 |
atcatgaatttcttagaatttttatgatgcatgctcatttcatagattagaaagcaaggaacataacaat-tgacttaccatgtttggcatcattgacat |
131 |
Q |
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| T |
3020724 |
atcatgaattgcatagaattgttaagatgcatgctcat---atagattaaaaaaaaac-aatataacaatatgccttaccatgttcagcatcatctacat |
3020819 |
T |
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| Q |
132 |
gatctaaaatggaatttgaagaagagttttcattgctatcaagatttctaaccacgaccttatccacctttattctaagagcaataagaaaattaatttg |
231 |
Q |
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| T |
3020820 |
gatgcataaaggatgttaaagatgaaatttcattgctatcaacatttccaaacccaaccttatcaacctttattctaaaagcaataagaaagttcatttg |
3020919 |
T |
|
| Q |
232 |
cttgcttaactcctcagcttcctcaacaacttccttcatcatcttcttataaaatccattaaccttgttaaactcaacatcaagtttcctgaaaaagata |
331 |
Q |
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|| ||||||||||||||||| |||||||||||||||| ||||||| |||||||| |||||||||| |||||||||| |||||||||| ||||||| | | |
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| T |
3020920 |
tttacttaactcctcagcttcatcaacaacttccttcaccatcttcctataaaatgcattaaccttattaaactcaaaatcaagtttcttgaaaaataaa |
3021019 |
T |
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| Q |
332 |
agatctctctctgctcc |
348 |
Q |
| |
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|| ||||| |||||||| |
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| T |
3021020 |
agttctctttctgctcc |
3021036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 106 - 348
Target Start/End: Original strand, 3010736 - 3010978
Alignment:
| Q |
106 |
cttaccatgtttggcatcattgacatgatctaaaatggaatttgaagaagagttttcattgctatcaagatttctaaccacgaccttatccacctttatt |
205 |
Q |
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|||||||||||| ||||||| |||||| | || ||| ||||||| ||| |||||||||| |||| |||| || | | ||||||| ||||||||| |
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| T |
3010736 |
cttaccatgtttagcatcatcttcatgatgcataaaggatgttgaagatgagatttcattgctgtcaaaattttcaaacccagccttatcaacctttatt |
3010835 |
T |
|
| Q |
206 |
ctaagagcaataagaaaattaatttgcttgcttaactcctcagcttcctcaacaacttccttcatcatcttcttataaaatccattaaccttgttaaact |
305 |
Q |
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|||| ||||||||||||||| ||||| | |||||||| |||||||| | |||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
3010836 |
ctaaaagcaataagaaaattcatttgttcacttaactcatcagcttcatgaacaacttccttcaccatcttcttataaaatgcattaaccttgttaaact |
3010935 |
T |
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| Q |
306 |
caacatcaagtttcctgaaaaagataagatctctctctgctcc |
348 |
Q |
| |
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||| |||||||||| ||||||| ||||||| | |||||||| |
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| T |
3010936 |
caatatcaagtttcttgaaaaactcaagatctatttctgctcc |
3010978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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