View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_34 (Length: 296)
Name: NF3687_low_34
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 5218542 - 5218285
Alignment:
| Q |
16 |
tgttctccgttgacacaatttgttttgagtattttgactgtgaatattctgcgcagccttggagttcttcatcatctatgtcctcttttgctcttgtggc |
115 |
Q |
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| T |
5218542 |
tgttctccgttgacacaatttgttttgagtattttgactgtgaatattctgcgcagccttggagttcttcatcatctatgtcctcttttgctcttgtggc |
5218443 |
T |
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| Q |
116 |
acatagttcctgtgaacgtaaatatacatcttctgtttaatttcatataattgaattagttacttcatatgattaaaacaatagagaaacacaccaaaca |
215 |
Q |
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| T |
5218442 |
acatagttcctgtgaaagtaaatatacatcttctgtttaatttcatataattgaattagttacttcatatgattaaaacaatagagaaacacaccaaaca |
5218343 |
T |
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| Q |
216 |
cgaaatcaacaccgaaatgacacattaaaactgataattatctgagaaaataatataa |
273 |
Q |
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| T |
5218342 |
cgaaatcaacaccgaaatgacacattaaaaccgataattatctgagaaaatgatataa |
5218285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 111 - 279
Target Start/End: Complemental strand, 5218171 - 5218008
Alignment:
| Q |
111 |
gtggcacatagttcctgtgaacgtaaatatacatcttctgtttaatttcatataattgaattagttacttcatatgattaaaacaatagagaaacacacc |
210 |
Q |
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|||||||||||||||| ||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || | |
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| T |
5218171 |
gtggcacatagttcctatgaacataaataca-----tctatttaatttcatataattgaattagttacttcatatgattgaaacaattgagaaacgcatc |
5218077 |
T |
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| Q |
211 |
aaacacgaaatcaacaccgaaatgacacattaaaactgataattatctgagaaaataatataattaact |
279 |
Q |
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| T |
5218076 |
gaacataacatcaacatcgaaatgacacattaaaaccaataattatttgaaaaaataatataattaact |
5218008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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