View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_4 (Length: 504)
Name: NF3687_low_4
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Complemental strand, 31570954 - 31570475
Alignment:
| Q |
18 |
gtatttgggagtgggaggctaatcaacctaaatgtttcattatgaagagtaatggaacaacccaatacattttcaaactcccagagtttctgttatataa |
117 |
Q |
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| T |
31570954 |
gtatttgggagtgggaggctaatcaacctaaatgtttcattatgaagagtaatggaacaacccaatacattttcaaactcccagagtttctgttatataa |
31570855 |
T |
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| Q |
118 |
cgatcttcaaccgcaatacttgctctaagctcttagtaattactatttccttttccaaaacaatttcctcttggaataaattccttctccatctaaaatt |
217 |
Q |
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| T |
31570854 |
cgatcttcaaccgcaatacttgctctaagctcttagtaattactatttccttttccaaaacaatttcctcttggaataaattccttctccatctaaaatt |
31570755 |
T |
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| Q |
218 |
taatttctagtactctcttttgtcttgcactatgtctctaacaaaaatagctttatcttctgataacaaaataaactctgctacttattcctaaggggga |
317 |
Q |
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| T |
31570754 |
taatttctagtactctcttttgtcttgcactatgtctctaacaaaaatagctttatcttctgataacaaaataaactctgctacttattcctaaggggga |
31570655 |
T |
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| Q |
318 |
taccctaaaaccaagggtcatctaaaaggagcaaatatcaatggcaaccaacaactaaacagtcacaatagaactaaataactacaagataaagagagta |
417 |
Q |
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| T |
31570654 |
taccctaaaaccaagggtcatctaaaaggagcaaatatcaatggcaaccaacaactaaacagtcacaatagaactaaataactacaagataaagagagta |
31570555 |
T |
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| Q |
418 |
aagagtattggtacaacaatgatctacatcttgggatgagaacatatctccaatccccccgtgtgttttagtgatgatgt |
497 |
Q |
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| T |
31570554 |
aagagtattggtacaacaatgatctacatcttgggatgagaacatatctccaatccctccgtgtgttttagtgatgatgt |
31570475 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 50432485 - 50432522
Alignment:
| Q |
345 |
ggagcaaatatcaatggcaaccaacaactaaacagtca |
382 |
Q |
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| T |
50432485 |
ggagcaaatatcaatggcaaccaacaaccaaacagtca |
50432522 |
T |
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