View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_41 (Length: 269)
Name: NF3687_low_41
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 1632450 - 1632240
Alignment:
| Q |
15 |
cattatgcatgcatatgaaataaacacacaacttagccaactcaacattctcatcaacatattaatttaattatgtatatagtcacagccgcaaaatcca |
114 |
Q |
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| T |
1632450 |
cattatgcatgcatatgaaataaacacacaacttagccaactcaacattctcatcaacatattaatttaattatgtatatagtcacagccgcaaaatcca |
1632351 |
T |
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| Q |
115 |
aattattgcatttataagcaagcttaagaatgttgttatgtgaatccacattaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttc |
214 |
Q |
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| T |
1632350 |
aattagtgcatttataagcaagcttaagaatgttgctatgtgaatccacattaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttc |
1632251 |
T |
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| Q |
215 |
tgaattattaa |
225 |
Q |
| |
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|||||| |||| |
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| T |
1632250 |
tgaattgttaa |
1632240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 10818138 - 10818347
Alignment:
| Q |
16 |
attatgcatgcatatgaaataaacacacaactta-gccaactcaacattctcatcaacatattaatttaattatgtatatagtcacagccgcaaaatcca |
114 |
Q |
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| T |
10818138 |
attatgcatgcatatgaaacaaacacacaacttaagccaactcaacattctcatcaacatattaatttaattatatatatagtcacagccgcaaattcca |
10818237 |
T |
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| Q |
115 |
aattattgcatttataagcaagcttaagaatgttgttatgtgaatccacattaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttc |
214 |
Q |
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| T |
10818238 |
aattagtgcatttataagtaagcttatgaatgttgctatgtgaat-cacattaggacacttgtttttcttgcaataacaagtaattaggcttcaactttc |
10818336 |
T |
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| Q |
215 |
tgaattattaa |
225 |
Q |
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||||||||||| |
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| T |
10818337 |
tgaattattaa |
10818347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 1608953 - 1608752
Alignment:
| Q |
15 |
cattatgcatgcatatgaaataaacacacaacttagccaactcaacattctcatcaacatattaatttaattatgtatatagtcacagccgcaaaatcca |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||| ||||||||||||||||||||||||| |
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| T |
1608953 |
cattatgcatgcatatgaaataaacacacaacttagccaactcaacatattaat-------ttaattta--tatatatatagtcacagccgcaaaatcca |
1608863 |
T |
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| Q |
115 |
aattattgcatttataagcaagcttaagaatgttgttatgtgaatccacattaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttc |
214 |
Q |
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| T |
1608862 |
aattagtgcatttataagtaagcttaagaatattgctatgtgaatccacattaagacacttgtttttcttgcaataacaagtaatttggcttcaactttc |
1608763 |
T |
|
| Q |
215 |
tgaattattaa |
225 |
Q |
| |
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|| |||||||| |
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| T |
1608762 |
tggattattaa |
1608752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 1614426 - 1614228
Alignment:
| Q |
16 |
attatgcatgcatatgaaataaacacacaactta-gccaactcaacattctcatcaacatattaatttaattatgtatatagtcacagccgcaaaatcca |
114 |
Q |
| |
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|||||||||| |||||||| ||| |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |
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| T |
1614426 |
attatgcatgaatatgaaacaaatacacaacttaagccaactcaacattctcat------------ttaattatatatatagtcacagccgcaaattcca |
1614339 |
T |
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| Q |
115 |
aattattgcatttataagcaagcttaagaatgttgttatgtgaatccacattaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttc |
214 |
Q |
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||||| | |||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||| | |||||||||| ||||||||||||| |
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| T |
1614338 |
aattagtacatttataagtaagcttaagaatgttgctatgtgaatccacattagcacacttgtttttcttgcactaacaagtaatttggcttcaactttc |
1614239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 1625863 - 1625753
Alignment:
| Q |
115 |
aattattgcatttataagcaagcttaagaatgttgttatgtgaatccacattaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttc |
214 |
Q |
| |
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||||| |||||| | ||| |||| |||||||||| |||||||| | |||| ||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
1625863 |
aattaatgcattaaaaagtaagcctaagaatgtttctatgtgaagctacatcaggacacttgtttttcttgcaatatcaagtaattaggctccaactttc |
1625764 |
T |
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| Q |
215 |
tgaattattaa |
225 |
Q |
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||||||||||| |
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| T |
1625763 |
tgaattattaa |
1625753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 1632194 - 1632153
Alignment:
| Q |
221 |
attaattctttcttgcaattcaatccaccgtctgtatctgtg |
262 |
Q |
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| T |
1632194 |
attaattctttcttgcaattgcatccaccgtctgtatctgtg |
1632153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 18786778 - 18786704
Alignment:
| Q |
151 |
tatgtgaatccacattaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttctgaattattaa |
225 |
Q |
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|||||||| | |||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
18786778 |
tatgtgaagctacatgaggacacttgtttttcttgcaataacaagtaattaggctccaactttctgaattattaa |
18786704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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