View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_43 (Length: 268)
Name: NF3687_low_43
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 8064017 - 8063772
Alignment:
| Q |
13 |
gctaatgggcccatgttact---gttacgacccaatgatgaagatgcaacttgcaacgttggattgctagaagatgatgcacattgaaattgaacaagcc |
109 |
Q |
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| T |
8064017 |
gctaatgggcccatgttactactgttacgacccaatgatgaagatccaacttgcaacgttggattgctagaagatgatgcacattgaaattgaacaagcc |
8063918 |
T |
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| Q |
110 |
caaaattactatcattatgatgattgggtatttccattatttgttgcttcattttctcttcattttcaacggtgaaatttgaagaagagttgactgagac |
209 |
Q |
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| T |
8063917 |
caaaattactatgattatgatgattgggtatttccattatttgttgcttcattttctcttcattttcaacggtgaaatttg---aagagttgactgagac |
8063821 |
T |
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| Q |
210 |
ttgaattggttgattaattaccaaattgaggtttttgtattcacctttg |
258 |
Q |
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| T |
8063820 |
ttgaattggttgattaattaccaaattgaggtttttgtattcacctttg |
8063772 |
T |
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