View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_45 (Length: 261)
Name: NF3687_low_45
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_45 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 15039782 - 15040047
Alignment:
| Q |
15 |
cacagagaggcaccgatttgtgaaaacaacactgcacagagtggaccaatcagtgcaacactaatcaattcacaacaaggcaatcgtacgtaacaatgga |
114 |
Q |
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| T |
15039782 |
cacaaagaggcaccgatttgtgaaaacaacactgcacagagtggaccaatcagtgcaacactaatcaattcacaacaaggcaatcgtacgtaacaatgga |
15039881 |
T |
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| Q |
115 |
aaataagttacggtggagcacttggaatagccaacaccgaaaacaaaagaataatggaagtaaacaagctaggcaaaccctagagct------------- |
201 |
Q |
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| T |
15039882 |
aaacaagttacggtggagcacttggaatagccaacaccgaaaacaaaagaataatggaagtaaacaagctaggcaaaccctagagctagatcacacaatt |
15039981 |
T |
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| Q |
202 |
------atatactttgcattatactcaatatttaaaattatcacaacacatataattgattgtaat |
261 |
Q |
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| T |
15039982 |
aaatacatatactttgcattatactcaatatttaaaattatcacaacacatataattgattgtaat |
15040047 |
T |
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