View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_49 (Length: 253)
Name: NF3687_low_49
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 27549004 - 27548754
Alignment:
| Q |
1 |
catttttaaaatttgtattttagactaacactatctcataaactagattaagagaagctagtttataacatgatagctg-cctcatttataatcc---at |
96 |
Q |
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| T |
27549004 |
catttttaaaatttgtattttagactaacactatctcataaactagattaagagaagctactttataacatgatagctgtcctcatttataatcccctat |
27548905 |
T |
|
| Q |
97 |
t---------aagcatgggtctattatgcaacacattgctcacacttgttacgagaactaacaattttctcgccaaatcacc---cttccacctcgatta |
184 |
Q |
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| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27548904 |
tctacttgataaacatgggtctattatgcaacacattcctcacacttgttacgagaactaacaattttctcgccaaatcaccacccttccacctcgatta |
27548805 |
T |
|
| Q |
185 |
tacaagggaattgtccccaaaattcatgctacaagttaatttgcaaatctc |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27548804 |
tacaagggaattgtccccaaaattcatgctacaagttaatttgcaaatctc |
27548754 |
T |
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