View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3687_low_5 (Length: 483)

Name: NF3687_low_5
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3687_low_5
NF3687_low_5
[»] chr8 (1 HSPs)
chr8 (173-465)||(4200728-4201020)
[»] chr5 (4 HSPs)
chr5 (205-347)||(1529583-1529725)
chr5 (1-132)||(3805579-3805706)
chr5 (350-465)||(1529805-1529920)
chr5 (80-132)||(4879328-4879380)
[»] chr7 (2 HSPs)
chr7 (65-132)||(17978657-17978724)
chr7 (64-132)||(17264875-17264943)
[»] chr4 (2 HSPs)
chr4 (283-347)||(29740898-29740962)
chr4 (69-132)||(22460431-22460494)
[»] chr2 (2 HSPs)
chr2 (65-132)||(29522540-29522607)
chr2 (64-131)||(36620156-36620223)
[»] chr6 (3 HSPs)
chr6 (63-132)||(6253774-6253843)
chr6 (78-132)||(10895560-10895614)
chr6 (73-118)||(26091863-26091907)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 173 - 465
Target Start/End: Original strand, 4200728 - 4201020
Alignment:
Q  173 tgaaactgttgttggagatgctgaacaaatttcaggcttcgaagttctgcaatcagttttataggacatattttttgaaaatagaacaggagatactttt 272  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||| |||||| ||      
T  4200728 tgaaactgtcgttggagatgctgaacaaatttcaggcttcgaagttctgcaatcagttttataggacatacattttgacaatagaacaagagatatttgc 4200827  T
Q  273 tgtcttgatagatacttctcataagtctgggttcaaattgcatgtcttggtgcttcaacatttattttgtctggttaaatctggtgtgctgactgagcct 372  Q
    |||||||||||| ||||  || ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||| |||||||||||||    
T  4200828 tgtcttgatagacactttgcacaagtctgggttcaaattgcatgtcttggtacttcaacatttattttgtctggctaaatccggtgcgctgactgagcct 4200927  T
Q  373 ctgtgggatgctgatacatgttcatatccataccgaaataatgttgcttttgtacgcatcatgacaataaaacttttaagcacttcatttccc 465  Q
    || ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4200928 ctatgggatgctgatacatgttcatatccataccaaagtaatgttgcttttgtacgcatcatgacaataaaacttttaagcagttcatttccc 4201020  T

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Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 205 - 347
Target Start/End: Original strand, 1529583 - 1529725
Alignment:
Q  205 caggcttcgaagttctgcaatcagttttataggacatattttttgaaaatagaacaggagatactttttgtcttgatagatacttctcataagtctgggt 304  Q
    ||||||||| |||||||||||||||||||| |||| |||||||||| |||||| || |||||| ||  |||||||| ||| |||| ||||||| ||||||    
T  1529583 caggcttcggagttctgcaatcagttttatcggacttattttttgacaatagagcaagagatatttgctgtcttgacagacacttttcataagcctgggt 1529682  T
Q  305 tcaaattgcatgtcttggtgcttcaacatttattttgtctggt 347  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  1529683 tcaaattgcatgtcttggtgcttcaacatttattatgtctggt 1529725  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 3805579 - 3805706
Alignment:
Q  1 gcttgttcttttctttccggttctggagaaaaccggcaatgagagtgggagggatgtgggtgagtgagtggcatggcagtaatattaaaaataactcagg 100  Q
    |||||||||||||||||| |||||||||||||  ||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||| |||    
T  3805579 gcttgttcttttctttcccgttctggagaaaattggcaatgagagtggga----tgtgggtgagtgagtggcatggcagtaatattaaaaataacttagg 3805674  T
Q  101 ggtattatggtattttcacaaaattaatgggt 132  Q
      ||||||||||||||| || |||||||||||    
T  3805675 aatattatggtattttcccagaattaatgggt 3805706  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 350 - 465
Target Start/End: Original strand, 1529805 - 1529920
Alignment:
Q  350 aatctggtgtgctgactgagcctctgtgggatgctgatacatgttcatatccataccgaaataatgttgcttttgtacgcatcatgacaataaaactttt 449  Q
    |||||||||  |||||||||||||| |||||||||| ||||  |||||||||||||| || ||||| ||||||||| |||      ||||| ||||||||    
T  1529805 aatctggtgccctgactgagcctctatgggatgctgctacaaattcatatccatacccaagtaatggtgcttttgtgcgcgagtacacaattaaactttt 1529904  T
Q  450 aagcacttcatttccc 465  Q
    |||||| |||||||||    
T  1529905 aagcacgtcatttccc 1529920  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 4879328 - 4879380
Alignment:
Q  80 taatattaaaaataactcaggggtattatggtattttcacaaaattaatgggt 132  Q
    ||||||||||| ||||| | ||||| ||||||||||||||| ||| |||||||    
T  4879328 taatattaaaattaacttaagggtaatatggtattttcacataataaatgggt 4879380  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 17978657 - 17978724
Alignment:
Q  65 tgagtggcatggcagtaatattaaaaataactcaggggtattatggtattttcacaaaattaatgggt 132  Q
    |||||||||||| ||||||||||||| ||| ||||||| ||||| ||||||||||||||| |||||||    
T  17978657 tgagtggcatggtagtaatattaaaattaattcaggggcattatagtattttcacaaaataaatgggt 17978724  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 17264875 - 17264943
Alignment:
Q  64 gtgagtggcatggcagtaatattaaaaataactcaggggtattatggtattttcacaaaattaatgggt 132  Q
    ||||||||||||  ||||||||||||| ||  ||| ||||||||| || |||||||||||| |||||||    
T  17264875 gtgagtggcatgatagtaatattaaaattacttcaagggtattatagtcttttcacaaaataaatgggt 17264943  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 29740962 - 29740898
Alignment:
Q  283 gatacttctcataagtctgggttcaaattgcatgtcttggtgcttcaacatttattttgtctggt 347  Q
    ||||||| ||||||| ||||||||||||| |||||| |||||||||| ||||| |||||||||||    
T  29740962 gatacttttcataagcctgggttcaaattacatgtcctggtgcttcagcatttgttttgtctggt 29740898  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 22460431 - 22460494
Alignment:
Q  69 tggcatggcagtaatattaaaaataactcaggggtattatggtattttcacaaaattaatgggt 132  Q
    ||||||| |||||||||||||| ||||||| ||||||||| || |||||||||||| |||||||    
T  22460431 tggcatgacagtaatattaaaattaactcatgggtattatagtcttttcacaaaataaatgggt 22460494  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 29522540 - 29522607
Alignment:
Q  65 tgagtggcatggcagtaatattaaaaataactcaggggtattatggtattttcacaaaattaatgggt 132  Q
    |||||||||||| ||||||||||||| |||  |||||| ||||| ||||||||||||||| |||||||    
T  29522540 tgagtggcatggtagtaatattaaaattaatccaggggcattatagtattttcacaaaataaatgggt 29522607  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 36620156 - 36620223
Alignment:
Q  64 gtgagtggcatggcagtaatattaaaaataactcaggggtattatggtattttcacaaaattaatggg 131  Q
    |||| |||||| || |||||||| ||| || || | ||||||||||||| ||||||||||||||||||    
T  36620156 gtgaatggcatagctgtaatattcaaattagcttaagggtattatggtaatttcacaaaattaatggg 36620223  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 6253843 - 6253774
Alignment:
Q  63 agtgagtggcatggcagtaatattaaaaataactcaggggtattatggtattttcacaaaattaatgggt 132  Q
    |||||||||||||  ||||||||||||| ||||||| ||| | ||||||||||||||| ||| |||||||    
T  6253843 agtgagtggcatgatagtaatattaaaattaactcaagggcaatatggtattttcacagaataaatgggt 6253774  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 10895560 - 10895614
Alignment:
Q  78 agtaatattaaaaataactcaggggtattatggtattttcacaaaattaatgggt 132  Q
    ||||||||||||| || |||||||||||||| || |||||||| ||| |||||||    
T  10895560 agtaatattaaaattacctcaggggtattatagtcttttcacagaataaatgggt 10895614  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 26091907 - 26091863
Alignment:
Q  73 atggcagtaatattaaaaataactcaggggtattatggtattttca 118  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  26091907 atggcagtgatattaaaattaac-caggggtattatggtattttca 26091863  T

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