View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3687_low_52 (Length: 251)

Name: NF3687_low_52
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3687_low_52
NF3687_low_52
[»] chr5 (10 HSPs)
chr5 (1-241)||(17048034-17048270)
chr5 (96-159)||(17042134-17042197)
chr5 (15-54)||(17036372-17036411)
chr5 (81-146)||(17024858-17024923)
chr5 (83-159)||(17031679-17031755)
chr5 (158-231)||(29673289-29673358)
chr5 (120-159)||(17036308-17036347)
chr5 (161-220)||(25905959-25906014)
chr5 (7-59)||(17042357-17042407)
chr5 (159-241)||(25906136-25906214)
[»] chr1 (2 HSPs)
chr1 (159-241)||(14760052-14760130)
chr1 (162-235)||(22679511-22679580)
[»] chr7 (3 HSPs)
chr7 (160-241)||(12821179-12821256)
chr7 (159-235)||(3555364-3555436)
chr7 (154-235)||(31172360-31172437)
[»] scaffold0042 (1 HSPs)
scaffold0042 (156-200)||(30307-30351)
[»] chr3 (2 HSPs)
chr3 (159-235)||(43907904-43907975)
chr3 (155-200)||(4304363-4304408)
[»] chr8 (2 HSPs)
chr8 (162-241)||(6906452-6906527)
chr8 (160-241)||(31212313-31212390)
[»] chr6 (1 HSPs)
chr6 (159-200)||(12290185-12290225)
[»] chr2 (1 HSPs)
chr2 (160-218)||(20972424-20972478)


Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 17048270 - 17048034
Alignment:
Q  1 attacgttcgtttttaagttaatttgaactttagacctcggagttagaagttctcaaatacnnnnnnnnnnnnnn-gatattttgtgtttttgtgatgta 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||               ||||||||||||||||||||||||    
T  17048270 attacgttcgtttttaagttaatttgaactttagacctcggagttagaagttttcaacgacaaaaaaaaaaaagaagatattttgtgtttttgtgatgta 17048171  T
Q  100 ctcacatgtatttatgtgaccattgctaatgaaatggtttaactttagtctttataaaaagggttaaataagtgaatgatccccttaaatataccaacat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  17048170 ctcacatgtatttatgtgaccattgctaatgaaatggtttaactttagtctttataaaaagggttaaataagtgaatgatccccttaaatataccaac-- 17048073  T
Q  200 taatttgattttagtcccccttaaagattttttaggcctttg 241  Q
      |||||| |||||||||||| ||||||||||||||| ||||    
T  17048072 --atttga-tttagtccccctaaaagattttttaggcttttg 17048034  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 17042197 - 17042134
Alignment:
Q  96 tgtactcacatgtatttatgtgaccattgctaatgaaatggtttaactttagtctttataaaaa 159  Q
    ||||||||||| ||||||||| | |||||| |||||||||||||||| ||||||||||||||||    
T  17042197 tgtactcacatttatttatgttagcattgcaaatgaaatggtttaacattagtctttataaaaa 17042134  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 17036411 - 17036372
Alignment:
Q  15 taagttaatttgaactttagacctcggagttagaagttct 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17036411 taagttaatttgaactttagacctcggagttagaagttct 17036372  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 17024923 - 17024858
Alignment:
Q  81 tttgtgtttttgtgatgtactcacatgtatttatgtgaccattgctaatgaaatggtttaacttta 146  Q
    ||||||||||||| ||||||||| ||||||| |||    |||||||||||||||||||||||||||    
T  17024923 tttgtgtttttgttatgtactcaaatgtattaatgctggcattgctaatgaaatggtttaacttta 17024858  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 17031755 - 17031679
Alignment:
Q  83 tgtgtttttgtgatgtactcacatgtatttatgtgaccattgctaatgaaatggtttaactttagtctttataaaaa 159  Q
    |||||||||||||||||||||||| ||||||||  |  ||||||||| ||||||| |||||||| | ||||| ||||    
T  17031755 tgtgtttttgtgatgtactcacatctatttatgctagaattgctaataaaatggtctaactttactttttatgaaaa 17031679  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 29673289 - 29673358
Alignment:
Q  158 aagggttaaataagtgaatgatccccttaaatataccaacattaatttgattttagtcccccttaaagattttt 231  Q
    ||||||||||||||| |||| |||||||||||||||||||    ||||||||||||||| ||| ||| ||||||    
T  29673289 aagggttaaataagtaaatggtccccttaaatataccaac----atttgattttagtcctcctaaaatattttt 29673358  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 17036347 - 17036308
Alignment:
Q  120 cattgctaatgaaatggtttaactttagtctttataaaaa 159  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  17036347 catttctaatgaaatggtttaactttagtctttataaaaa 17036308  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 25905959 - 25906014
Alignment:
Q  161 ggttaaataagtgaatgatccccttaaatataccaacattaatttgattttagtccccct 220  Q
    |||||||||||| ||||||||||||| ||||||||||    |||||||||||||||||||    
T  25905959 ggttaaataagtaaatgatccccttatatataccaac----atttgattttagtccccct 25906014  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 17042407 - 17042357
Alignment:
Q  7 ttcgtttttaagttaatttgaactttagacctcggagttagaagttctcaaat 59  Q
    |||||||||||||||||||||||  |||| || ||||||||||||||||||||    
T  17042407 ttcgtttttaagttaatttgaac--tagatctaggagttagaagttctcaaat 17042357  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 25906214 - 25906136
Alignment:
Q  159 agggttaaataagtgaatgatccccttaaatataccaacattaatttgattttagtcccccttaaagattttttaggcctttg 241  Q
    |||||||||||||| ||| |||| | |||||||| |||||||    |||||||||||||||||||| ||| ||||||| ||||    
T  25906214 agggttaaataagtaaataatcctcctaaatatatcaacatt----tgattttagtcccccttaaatattctttaggcttttg 25906136  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 14760130 - 14760052
Alignment:
Q  159 agggttaaataagtgaatgatccccttaaatataccaacattaatttgattttagtcccccttaaagattttttaggcctttg 241  Q
    |||||||||||||| ||||||||||||||||||||||||    ||||||||||| ||||||| ||| ||||||||||| ||||    
T  14760130 agggttaaataagtaaatgatccccttaaatataccaac----atttgattttaatccccctaaaatattttttaggcttttg 14760052  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 22679580 - 22679511
Alignment:
Q  162 gttaaataagtgaatgatccccttaaatataccaacattaatttgattttagtcccccttaaagattttttagg 235  Q
    ||||||||||| || ||||||| |||||||||||||    |||||||||||||||| || ||| |||| |||||    
T  22679580 gttaaataagtaaacgatccccctaaatataccaac----atttgattttagtccctctaaaatatttgttagg 22679511  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 12821179 - 12821256
Alignment:
Q  160 gggttaaataagtgaatgatccccttaaatataccaacattaatttgattttagtcccccttaaagattttttaggcctttg 241  Q
    ||||||||||||| |||| |||||||||||||||||||     |||||||||| ||||||| ||| ||||||||||| ||||    
T  12821179 gggttaaataagtaaatggtccccttaaatataccaac----gtttgattttaatccccctaaaatattttttaggcttttg 12821256  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 3555364 - 3555436
Alignment:
Q  159 agggttaaataagtgaatgatccccttaaatataccaacattaatttgattttagtcccccttaaagattttttagg 235  Q
    |||||||||||||  |||| ||||| |||||||||||||    ||||||||||||||||||| ||| |||| |||||    
T  3555364 agggttaaataagcaaatggtccccctaaatataccaac----atttgattttagtccccctaaaatatttcttagg 3555436  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 31172437 - 31172360
Alignment:
Q  154 taaaaagggttaaataagtgaatgatccccttaaatataccaacattaatttgattttagtcccccttaaagattttttagg 235  Q
    |||| ||| |||||||||| ||||||||| |||||||||| ||||||    |||||||| ||| ||| ||| ||||||||||    
T  31172437 taaataggattaaataagtaaatgatccctttaaatatacaaacatt----tgattttaatcctcctaaaatattttttagg 31172360  T

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Target: scaffold0042 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 30307 - 30351
Alignment:
Q  156 aaaagggttaaataagtgaatgatccccttaaatataccaacatt 200  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||    
T  30307 aaaagggttaaataagtgaatggtccccataaatatactaacatt 30351  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 43907975 - 43907904
Alignment:
Q  159 agggttaaataagtgaatgatccccttaaatataccaacattaatttgattttagtcccccttaaagattttttagg 235  Q
    |||||||||||||| |||||| ||||||||||||| ||     ||||||||||||||||||| ||| ||||||||||    
T  43907975 agggttaaataagtaaatgat-cccttaaatatactaa----tatttgattttagtccccctaaaatattttttagg 43907904  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 4304408 - 4304363
Alignment:
Q  155 aaaaagggttaaataagtgaatgatccccttaaatataccaacatt 200  Q
    |||||||||||||||||| ||| ||| || ||||||||||||||||    
T  4304408 aaaaagggttaaataagtaaataatctccctaaatataccaacatt 4304363  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 6906527 - 6906452
Alignment:
Q  162 gttaaataagtgaatgatccccttaaatataccaacattaatttgattttagtcccccttaaagattttttaggcctttg 241  Q
    ||||||||||| || | ||||| ||||||||||||||||    |||||||||||||| | ||| ||||||||||| ||||    
T  6906527 gttaaataagtaaacggtccccctaaatataccaacatt----tgattttagtccccataaaatattttttaggcttttg 6906452  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 31212313 - 31212390
Alignment:
Q  160 gggttaaataagtgaatgatccccttaaatataccaacattaatttgattttagtcccccttaaagattttttaggcctttg 241  Q
    ||||||||||||| |||  |||||||||||||| ||||    ||||||||||||||||| | ||| ||| ||||||| ||||    
T  31212313 gggttaaataagtaaatagtccccttaaatatatcaac----atttgattttagtccccataaaatattctttaggcttttg 31212390  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 12290225 - 12290185
Alignment:
Q  159 agggttaaataagtgaatgatccccttaaatataccaacatt 200  Q
    |||||||||||||| |||||||||| ||||||||||||||||    
T  12290225 agggttaaataagtaaatgatcccc-taaatataccaacatt 12290185  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 20972478 - 20972424
Alignment:
Q  160 gggttaaataagtgaatgatccccttaaatataccaacattaatttgattttagtcccc 218  Q
    |||||||||||||||||| |||| ||||||||| ||||    |||||||||||||||||    
T  20972478 gggttaaataagtgaatggtccctttaaatatatcaac----atttgattttagtcccc 20972424  T

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