View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3687_low_54 (Length: 250)

Name: NF3687_low_54
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3687_low_54
NF3687_low_54
[»] chr7 (14 HSPs)
chr7 (1-221)||(19927928-19928146)
chr7 (1-221)||(25443781-25444001)
chr7 (1-221)||(30947743-30947962)
chr7 (58-221)||(40819605-40819768)
chr7 (59-221)||(26279619-26279781)
chr7 (1-91)||(37243003-37243093)
chr7 (5-125)||(22205102-22205222)
chr7 (5-125)||(22229517-22229637)
chr7 (3-158)||(45280932-45281088)
chr7 (40-158)||(22293061-22293179)
chr7 (159-210)||(22205008-22205059)
chr7 (159-210)||(22229680-22229731)
chr7 (160-210)||(22293205-22293255)
chr7 (116-156)||(36630746-36630786)
[»] chr6 (3 HSPs)
chr6 (1-220)||(21112271-21112490)
chr6 (1-221)||(8862213-8862433)
chr6 (1-40)||(11382698-11382737)
[»] chr3 (15 HSPs)
chr3 (1-220)||(959018-959237)
chr3 (1-221)||(39580076-39580296)
chr3 (1-221)||(25041521-25041742)
chr3 (1-221)||(42864453-42864669)
chr3 (1-221)||(4533653-4533873)
chr3 (1-173)||(39674362-39674532)
chr3 (1-164)||(53330421-53330586)
chr3 (1-164)||(53334105-53334270)
chr3 (1-164)||(53337782-53337947)
chr3 (112-220)||(21869148-21869256)
chr3 (3-158)||(22976519-22976673)
chr3 (3-99)||(29359917-29360011)
chr3 (159-220)||(22976432-22976493)
chr3 (159-214)||(29360074-29360129)
chr3 (125-158)||(29360014-29360047)
[»] chr4 (3 HSPs)
chr4 (1-221)||(54260308-54260528)
chr4 (30-108)||(26261246-26261323)
chr4 (117-158)||(26261383-26261424)
[»] chr8 (11 HSPs)
chr8 (1-221)||(17068358-17068578)
chr8 (1-221)||(17579695-17579915)
chr8 (1-221)||(17630837-17631057)
chr8 (1-221)||(21076153-21076373)
chr8 (1-221)||(29054745-29054966)
chr8 (1-221)||(20289523-20289743)
chr8 (35-221)||(34964423-34964609)
chr8 (1-131)||(10861549-10861679)
chr8 (4-155)||(3046537-3046688)
chr8 (146-221)||(10861482-10861557)
chr8 (160-220)||(3046447-3046507)
[»] chr5 (10 HSPs)
chr5 (1-221)||(8871427-8871647)
chr5 (1-221)||(13854368-13854588)
chr5 (1-123)||(36606358-36606480)
chr5 (3-155)||(6665857-6666009)
chr5 (3-158)||(32659069-32659224)
chr5 (154-221)||(36606474-36606541)
chr5 (159-215)||(6666038-6666094)
chr5 (19-72)||(30131347-30131399)
chr5 (175-221)||(32659267-32659313)
chr5 (117-158)||(30131211-30131252)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-221)||(37725-37945)
[»] chr2 (4 HSPs)
chr2 (4-221)||(14811462-14811679)
chr2 (1-221)||(14314062-14314288)
chr2 (11-115)||(29081109-29081213)
chr2 (114-158)||(13043622-13043666)
[»] chr1 (2 HSPs)
chr1 (1-218)||(46397774-46397987)
chr1 (4-158)||(33368964-33369114)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 19928146 - 19927928
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||||||||||| ||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19928146 atcaagtctggcagcgctatcaaaatcata--gtctcttctaacctaaaaaaatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 19928049  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19928048 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 19927949  T
Q  201 caacattagataaagatgttc 221  Q
    |||||||||||||||||||||    
T  19927948 caacattagataaagatgttc 19927928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 25443781 - 25444001
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||   | |||||||| |||||||||| ||||||||||||||| ||||||||    
T  25443781 atcaagtctggcagcgctatcaaaatcatattgtttcttctaacctaaaaaataagggtttctcatcaccacatatcaatagctattctcttttctaacc 25443880  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  25443881 attaccacagattgaattctactctgtttctcttctctctaatgttatgtttcttctgctatttgttttcgatataaattagtgttaactgttaagtagt 25443980  T
Q  201 caacattagataaagatgttc 221  Q
    |||||||||| ||||||||||    
T  25443981 caacattagacaaagatgttc 25444001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30947743 - 30947962
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30947743 atcaagtctggcagcgctatcaaaatcatattgtctcttctaatctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaacc 30947842  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    |||||||| |||||||||||||| |||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  30947843 attaccaccgattgaattctactatgtttctcttctctc-gatgttatgtttcttctgccgtttgttttcgatataaattagtgttaactgttaaatagt 30947941  T
Q  201 caacattagataaagatgttc 221  Q
    |||||||||| ||||||||||    
T  30947942 caacattagacaaagatgttc 30947962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 40819768 - 40819605
Alignment:
Q  58 gtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttct 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40819768 gtttctcgtcaccacatagcaatagctattctctcttctaaccattaccacttattgaattctactctgtttctcttctctctaatgttatgtttcttct 40819669  T
Q  158 gctgtttgttttcgatataaattagtgataactgttaagtagtcaacattagataaagatgttc 221  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40819668 gctgtttgttttcgatataaattagtgataacagttaagtagtcaacattagataaagatgttc 40819605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 59 - 221
Target Start/End: Complemental strand, 26279781 - 26279619
Alignment:
Q  59 tttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctg 158  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26279781 tttctcgtcaccacataacaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctg 26279682  T
Q  159 ctgtttgttttcgatataaattagtgataactgttaagtagtcaacattagataaagatgttc 221  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||| || ||||||||||    
T  26279681 ctgtttgttttcgatataaattaatgttaactgttaagtagtcaacattggacaaagatgttc 26279619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 37243093 - 37243003
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctct 91  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||    
T  37243093 atcaagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaataactattctct 37243003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 22205222 - 22205102
Alignment:
Q  5 agtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaaccatta 104  Q
    |||||| ||||||||| |||| ||| |||||||||||| || ||||| ||| ||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  22205222 agtctgccagcactataaaaaacattttgtctcttctatcccaaaaaaatagggtttctcgtcaccaaatagcgatagctattccctcttctaaccatta 22205123  T
Q  105 ccactgattgaattctactct 125  Q
    || | ||||||||||||||||    
T  22205122 ccgccgattgaattctactct 22205102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 22229517 - 22229637
Alignment:
Q  5 agtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaaccatta 104  Q
    |||||| ||||||||| |||| ||| |||||||||||| || ||||| ||| ||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  22229517 agtctgccagcactataaaaaacattttgtctcttctatcccaaaaaaatagggtttctcgtcaccaaatagcgatagctattccctcttctaaccatta 22229616  T
Q  105 ccactgattgaattctactct 125  Q
    || | ||||||||||||||||    
T  22229617 ccgccgattgaattctactct 22229637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 45280932 - 45281088
Alignment:
Q  3 caagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaata-tatggtttctcgtcaccacatagcaatagctattctctcttctaacca 101  Q
    |||||||||| || | || |||| ||||||||||||||||||| ||||| | || |||||||| |||||||| ||| |||| ||||| ||||||||||||    
T  45280932 caagtctggccgcgcaataaaaaacatattgtctcttctaacccaaaaaaaatagggtttctcatcaccacacagcgatagttattccctcttctaacca 45281031  T
Q  102 ttaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctg 158  Q
     || |||  |||| |||||||| ||||||||||  ||||||||| ||||||||||||    
T  45281032 atatcaccaattgtattctactatgtttctctttgctctaatgtcatgtttcttctg 45281088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 22293061 - 22293179
Alignment:
Q  40 ctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctcttctctc 139  Q
    |||||| |||||  || ||||||||||||||| ||| | |||| ||||| ||||||||||||||||||| |||  ||||||||| |||||||||||||||    
T  22293061 ctaacccaaaaaagtagggtttctcgtcaccatataacgatagttattccctcttctaaccattaccaccgatcaaattctactatgtttctcttctctc 22293160  T
Q  140 taatgttatgtttcttctg 158  Q
    ||||  |||||||| ||||    
T  22293161 taatactatgtttcctctg 22293179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 22205059 - 22205008
Alignment:
Q  159 ctgtttgttttcgatataaattagtgataactgttaagtagtcaacattaga 210  Q
    |||||| ||||||||||||||||||| ||||| ||| |||||||||||||||    
T  22205059 ctgtttcttttcgatataaattagtgttaactattaggtagtcaacattaga 22205008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 22229680 - 22229731
Alignment:
Q  159 ctgtttgttttcgatataaattagtgataactgttaagtagtcaacattaga 210  Q
    |||||| ||||||||||||||||||| ||||| ||| |||||||||||||||    
T  22229680 ctgtttcttttcgatataaattagtgttaactattaggtagtcaacattaga 22229731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 22293205 - 22293255
Alignment:
Q  160 tgtttgttttcgatataaattagtgataactgttaagtagtcaacattaga 210  Q
    |||||||||| ||| |||||||||| ||||| |||||||||||||||||||    
T  22293205 tgtttgtttttgatctaaattagtgttaactattaagtagtcaacattaga 22293255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 36630746 - 36630786
Alignment:
Q  116 attctactctgtttctcttctctctaatgttatgtttcttc 156  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  36630746 attctactatgtttctcttctttctaatgttatgtttcttc 36630786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 21112271 - 21112490
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21112271 atcaagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaacc 21112370  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  21112371 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgtttttgatataaattagtgttaactgttaagtagt 21112470  T
Q  201 caacattagataaagatgtt 220  Q
    |||||||||| |||||||||    
T  21112471 caacattagacaaagatgtt 21112490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8862213 - 8862433
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||    
T  8862213 atcaagtctagcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccgcatagcaatagctattctctcttctaacc 8862312  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  8862313 attaccactgattgaattctactctgtttctcttctctataatgttatgtttcttctactgtttgttttcgatataaattagtgataactgttaagtggt 8862412  T
Q  201 caacattagataaagatgttc 221  Q
    |||||||||| ||||||||||    
T  8862413 caacattagacaaagatgttc 8862433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11382698 - 11382737
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttc 40  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  11382698 atcaagtctgacagcgctatcaaaatcatattgtctcttc 11382737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 959018 - 959237
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||    
T  959018 atcaagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagaaatagctattctctcttctaacc 959117  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  959118 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataaccgttaagtagt 959217  T
Q  201 caacattagataaagatgtt 220  Q
    |||||||||| |||||||||    
T  959218 caacattagacaaagatgtt 959237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 39580076 - 39580296
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | ||||    
T  39580076 atcaactctggcagcgctatcaaaatcataatgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctctaccaacc 39580175  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39580176 attaccactgattgaattctactttgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgttaactgttaagtagt 39580275  T
Q  201 caacattagataaagatgttc 221  Q
    |||||||||| ||||||||||    
T  39580276 caacattagacaaagatgttc 39580296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 25041521 - 25041742
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaata-tatggtttctcgtcaccacatagcaatagctattctctcttctaac 99  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| || ||||    
T  25041521 atcaagtctggctgcgctatcaaaatcatattgtctcttctaacctaaaaaaaatagggtttctcgtcaccacatagcaatagctattctcttttttaac 25041620  T
Q  100 cattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtag 199  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25041621 cattaccactgattaaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgttaactgttaagtag 25041720  T
Q  200 tcaacattagataaagatgttc 221  Q
    ||||||||||| ||||||||||    
T  25041721 tcaacattagacaaagatgttc 25041742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42864453 - 42864669
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42864453 atcaagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaacc 42864552  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    |||||||||||    
T  42864553 attaccactaattgaattctactatgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattactga----tgttaagtagt 42864648  T
Q  201 caacattagataaagatgttc 221  Q
    || ||||||| ||||||||||    
T  42864649 caccattagacaaagatgttc 42864669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4533653 - 4533873
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||| ||||||| |||||||||||||||| |||||||||||||||||  ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  4533653 atcaagtttggcagcgctatcaaaatcatattatctcttctaacctaaaataatagggtttctcgtcaccacataacaatagctattctctcttctaacc 4533752  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| ||||    
T  4533753 attaccacttattgaattctactctgtttctcttctctctaatgttatgtttcttttgctgtttgttttcgatataaattattgttaactgttaattagt 4533852  T
Q  201 caacattagataaagatgttc 221  Q
    |||||||||| ||||||||||    
T  4533853 caacattagacaaagatgttc 4533873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 39674362 - 39674532
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||  |    
T  39674362 atcaagtctgacagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttcta--c 39674459  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgat 173  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39674460 attaccactgattgaattctactccgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgat 39674532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 53330586 - 53330421
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatat--ggtttctcgtcaccacatagcaatagctattctctcttctaa 98  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||||  ||||| | ||  ||||||||||||||||||||||||||||||||||||||||||    
T  53330586 atcaagtctggaagcgctaccaaaatcatattgtctcttctaacaaaaaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaa 53330487  T
Q  99 ccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgttt 164  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53330486 ccattatcactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgttt 53330421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 53334270 - 53334105
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatat--ggtttctcgtcaccacatagcaatagctattctctcttctaa 98  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||||  ||||| | ||  ||||||||||||||||||||||||||||||||||||||||||    
T  53334270 atcaagtctggaagcgctaccaaaatcatattgtctcttctaacaaaaaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaa 53334171  T
Q  99 ccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgttt 164  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53334170 ccattatcactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgttt 53334105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 53337947 - 53337782
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatat--ggtttctcgtcaccacatagcaatagctattctctcttctaa 98  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||||  ||||| | ||  ||||||||||||||||||||||||||||||||||||||||||    
T  53337947 atcaagtctggaagcgctaccaaaatcatattgtctcttctaacaaaaaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaa 53337848  T
Q  99 ccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgttt 164  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53337847 ccattatcactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgttt 53337782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 21869148 - 21869256
Alignment:
Q  112 ttgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagtcaacattagat 211  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||     
T  21869148 ttgaattctactatgtttctcttctctctaatgttatgtttcttctgctgtttgttttcaatataaattagtgttaactgttaagtagtcaacattagac 21869247  T
Q  212 aaagatgtt 220  Q
    |||||||||    
T  21869248 aaagatgtt 21869256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 158
Target Start/End: Complemental strand, 22976673 - 22976519
Alignment:
Q  3 caagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaaccat 102  Q
    ||||||| ||||| ||||||||| ||||||||||||| ||||| ||||| ||| ||||||||||||||||||||| |||||||||  |||||||||||||    
T  22976673 caagtctagcagcgctatcaaaaacatattgtctcttttaacccaaaaa-atagggtttctcgtcaccacatagcgatagctatttcctcttctaaccat 22976575  T
Q  103 taccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctg 158  Q
    |||||| |||||||||||||| ||||||| ||||||||||||  ||||||||||||    
T  22976574 taccaccgattgaattctactatgtttcttttctctctaatgccatgtttcttctg 22976519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 29359917 - 29360011
Alignment:
Q  3 caagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaac 99  Q
    ||||||||  ||| ||||||||| ||||||||||||||||||| ||||| |||  |||||||||||||| ||||| |||||||||| ||||||||||    
T  29359917 caagtctgatagcgctatcaaaaacatattgtctcttctaacccaaaaa-atagtgtttctcgtcaccatatagcgatagctattc-ctcttctaac 29360011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 22976493 - 22976432
Alignment:
Q  159 ctgtttgttttcgatataaattagtgataactgttaagtagtcaacattagataaagatgtt 220  Q
    |||||| ||||||||||||||||||| ||||| ||||||||||||||||||| |||| ||||    
T  22976493 ctgtttattttcgatataaattagtgttaactattaagtagtcaacattagacaaaggtgtt 22976432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 29360074 - 29360129
Alignment:
Q  159 ctgtttgttttcgatataaattagtgataactgttaagtagtcaacattagataaa 214  Q
    ||||||||||||||| |||||||||| ||||| | ||| |||||||||||||||||    
T  29360074 ctgtttgttttcgatctaaattagtgttaactatcaagcagtcaacattagataaa 29360129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 29360014 - 29360047
Alignment:
Q  125 tgtttctcttctctctaatgttatgtttcttctg 158  Q
    ||||||||||||||||||||||||||||||||||    
T  29360014 tgtttctcttctctctaatgttatgtttcttctg 29360047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 54260308 - 54260528
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  54260308 atcaagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaataggttttctcgtcaccacatagcaatagctattctctcttctaacc 54260407  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  54260408 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgttaactattaagtagt 54260507  T
Q  201 caacattagataaagatgttc 221  Q
    |||||||||| ||||||||||    
T  54260508 caacattagacaaagatgttc 54260528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 26261246 - 26261323
Alignment:
Q  30 attgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccac 108  Q
    ||||||||||||||||  |||| |||  |||||||||||||||  ||| |||||||||| |||||||||||||||||||    
T  26261246 attgtctcttctaaccccaaaa-atagagtttctcgtcaccaccgagctatagctattccctcttctaaccattaccac 26261323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 26261383 - 26261424
Alignment:
Q  117 ttctactctgtttctcttctctctaatgttatgtttcttctg 158  Q
    |||| |||| |||||||||||||||||| |||||||||||||    
T  26261383 ttctgctctctttctcttctctctaatgctatgtttcttctg 26261424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 17068358 - 17068578
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||||| ||||| |||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17068358 atcaagtctcgcagcgctatcaaaatcatattatctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaacc 17068457  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17068458 attaccactgattgaattttactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgttaactgttaagtagt 17068557  T
Q  201 caacattagataaagatgttc 221  Q
    |||||||||| ||||||||||    
T  17068558 caacattagacaaagatgttc 17068578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 17579915 - 17579695
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||||| ||||| |||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17579915 atcaagtctcgcagcgctatcaaaatcatattatctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaacc 17579816  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17579815 attaccactgattgaattttactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgttaactgttaagtagt 17579716  T
Q  201 caacattagataaagatgttc 221  Q
    |||||||||| ||||||||||    
T  17579715 caacattagacaaagatgttc 17579695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 17631057 - 17630837
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  17631057 atcaagtctggcaacgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccaaatagcaatagctattctctcttctaacc 17630958  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||    
T  17630957 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttattctgctgttagttttcgatataaattagtgttaactgttaagtagt 17630858  T
Q  201 caacattagataaagatgttc 221  Q
    |||||||||| ||| ||||||    
T  17630857 caacattagacaaatatgttc 17630837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 21076153 - 21076373
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21076153 atcaagtctggcagcgctatcaaaatcatattgtcttttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaacc 21076252  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||| |||||||| |    
T  21076253 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttatgttgtttgttttcgatataaattagtgttaaccgttaagtaat 21076352  T
Q  201 caacattagataaagatgttc 221  Q
     ||||||||| ||||||||||    
T  21076353 taacattagacaaagatgttc 21076373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29054745 - 29054966
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaa--tagctattctctcttctaa 98  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  |||||||||||||||||||    
T  29054745 atcaagtttggcagcgttatcaaaatcatattgtctcttctaacctaaaaa-atagggtttctcgtcaccacatagcaaaatagctattctctcttctaa 29054843  T
Q  99 ccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagta 198  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  29054844 ccattaccactgattgaattctactatgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgttaacggttaagta 29054943  T
Q  199 gtcaacattagataaagatgttc 221  Q
    |||||||||||| ||||||||||    
T  29054944 gtcaacattagacaaagatgttc 29054966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20289523 - 20289743
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20289523 atcaagtctggcagcgctatcaaaatcatattgtcttttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaacc 20289622  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||| |||||||| |    
T  20289623 attaacactaattgaattctactctgtttctcttctctctaatgttatgtttcttatgttgtttgttttcgatataaattagtgttaaccgttaagtaat 20289722  T
Q  201 caacattagataaagatgttc 221  Q
     ||||||||| ||||||||||    
T  20289723 taacattagacaaagatgttc 20289743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 35 - 221
Target Start/End: Complemental strand, 34964609 - 34964423
Alignment:
Q  35 ctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactgattgaattctactctgtttctctt 134  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||    
T  34964609 ctcttctaacctaaaaaaatagggtttctcgtcaccgcatagcaatagctattctctcttctaaccattacctttgattgaattctactatgtttctctt 34964510  T
Q  135 ctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagtcaacattagataaagatgttc 221  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  34964509 ctctctaatgttatgtttattctgctgtttgttttcgatgtaaattagtgttaactgttaagtagtcaacattagacaaagatgttc 34964423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 10861679 - 10861549
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    |||| |||||||||| || ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10861679 atcaggtctggcagcgctctcaaaatcatattctctcttctaacctaaaaatatagggtttctcgtcaccacatagcaatagctattctctcttctaacc 10861580  T
Q  101 attaccactgattgaattctactctgtttct 131  Q
    ||||||||||||||||||||||| |||||||    
T  10861579 attaccactgattgaattctactatgtttct 10861549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 3046688 - 3046537
Alignment:
Q  4 aagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaaccatt 103  Q
    |||| ||||||| ||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||||| | ||| |||||| ||||||||||||||    
T  3046688 aagtttggcagcgctatcaaaaacatattgtctcttctaacccaaaaaaatagggtttctcgtcaccacataacgataactattccctcttctaaccatt 3046589  T
Q  104 accactgattgaattctactctgtttctcttctctctaatgttatgtttctt 155  Q
    |||||  ||||||||||||| ||||||||||  ||||||||  |||||||||    
T  3046588 accaccaattgaattctactatgtttctctttgctctaatgccatgtttctt 3046537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 10861557 - 10861482
Alignment:
Q  146 tatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagtcaacattagataaagatgttc 221  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  10861557 tatgtttcttctgctgtttgttttcgatataaattagtgttaactattaagtagtcaacattagacaaagatgttc 10861482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 3046507 - 3046447
Alignment:
Q  160 tgtttgttttcgatataaattagtgataactgttaagtagtcaacattagataaagatgtt 220  Q
    |||||||||| |||||||||||||| ||| | ||||||||||||||||||| |||| ||||    
T  3046507 tgtttgtttttgatataaattagtgttaaatattaagtagtcaacattagacaaaggtgtt 3046447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8871427 - 8871647
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8871427 atcaagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaacc 8871526  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8871527 attaccactaattgaattctactatgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgttaactgttaagtagt 8871626  T
Q  201 caacattagataaagatgttc 221  Q
    |||||||||| ||| ||||||    
T  8871627 caacattagacaaaaatgttc 8871647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 13854588 - 13854368
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaata-tatggtttctcgtcaccacatagcaatagctattctctcttctaac 99  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||| | || ||||||||||||||||||||||||| ||||| |||||||||||    
T  13854588 atcaagtctggcagcgctatcaaaatcatattgtctctcctaacctaaaaaaaatagggtttctcgtcaccacatagcaataactattatctcttctaac 13854489  T
Q  100 cattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtag 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  13854488 cattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctatttg-tttcgatataaattagtgttaactgttaagtag 13854390  T
Q  200 tcaacattagataaagatgttc 221  Q
    ||||||||||| ||||||||||    
T  13854389 tcaacattagacaaagatgttc 13854368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 36606358 - 36606480
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36606358 atcaagtctggcagcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattctctcttctaacc 36606457  T
Q  101 attaccactgattgaattctact 123  Q
    |||| ||||||||||||||||||    
T  36606458 attatcactgattgaattctact 36606480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 6665857 - 6666009
Alignment:
Q  3 caagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaaccat 102  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||||||| ||| |||||| |||||||||||||    
T  6665857 caagtctggcagcgctatcaaaaacatattgtctcttctaacccaaaaaaatagggtttctcgtcaccacatagcgataactattccctcttctaaccat 6665956  T
Q  103 taccactgattgaattctactctgtttctcttctctctaatgttatgtttctt 155  Q
    ||||||  ||||||||||||| ||||||||||  ||||||||  |||||||||    
T  6665957 taccaccaattgaattctactatgtttctctttgctctaatgccatgtttctt 6666009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 32659069 - 32659224
Alignment:
Q  3 caagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaaccat 102  Q
    ||||||||||| | ||||||||| |||||||||||||||||||  |||||||| ||||||||||||||||||||| ||||||||||  ||||||| ||||    
T  32659069 caagtctggcaacgctatcaaaaacatattgtctcttctaaccccaaaatatagggtttctcgtcaccacatagcgatagctattccatcttctacccat 32659168  T
Q  103 taccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctg 158  Q
    |||   |||||||||||||||  ||||||| || ||||||||||||||||||||||    
T  32659169 tacttatgattgaattctactaagtttctcctccctctaatgttatgtttcttctg 32659224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 36606474 - 36606541
Alignment:
Q  154 ttctgctgtttgttttcgatataaattagtgataactgttaagtagtcaacattagataaagatgttc 221  Q
    |||| |||||||||||  ||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  36606474 ttctactgtttgtttttaatataaattagtattaactgttaagtagtcaacattagacaaagatgttc 36606541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 6666038 - 6666094
Alignment:
Q  159 ctgtttgttttcgatataaattagtgataactgttaagtagtcaacattagataaag 215  Q
    |||||||||||||||||||||||||| |||||  |||||||||||||||||| ||||    
T  6666038 ctgtttgttttcgatataaattagtgttaactagtaagtagtcaacattagacaaag 6666094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 30131399 - 30131347
Alignment:
Q  19 atcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccac 72  Q
    ||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  30131399 atcaaaaacatattgcctcttctaacctaaaaa-atagggtttctcgtcaccac 30131347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 32659267 - 32659313
Alignment:
Q  175 taaattagtgataactgttaagtagtcaacattagataaagatgttc 221  Q
    |||||||||| ||||| ||||||||||||||||||| |||| |||||    
T  32659267 taaattagtgttaactattaagtagtcaacattagacaaaggtgttc 32659313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 30131252 - 30131211
Alignment:
Q  117 ttctactctgtttctcttctctctaatgttatgtttcttctg 158  Q
    ||||||| | |||||||||||||||||| |||||||||||||    
T  30131252 ttctactttatttctcttctctctaatgctatgtttcttctg 30131211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37945 - 37725
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  37945 atcaagtctggcagcgctatcaaaatcatattgtctcttttaacctaaaaaaatagggtttctcgtcaccacatagcaatagctattttctcttctaacc 37846  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  37845 attaccgctgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaatttgtgttaactgttaagtagt 37746  T
Q  201 caacattagataaagatgttc 221  Q
    |||||||||| ||||||||||    
T  37745 caacattagacaaagatgttc 37725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 14811462 - 14811679
Alignment:
Q  4 aagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaaccatt 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  14811462 aagtctggcagcactattaaaatcatattgtctcttctaacctaaaaaaataggatttctcgtcaccacatagcaatagctattctctcttctaaccatt 14811561  T
Q  104 accactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagtcaa 203  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  14811562 accactgattgaattctactctatttctcttctctctaatgttatgtttcttctattgtttgttttcgatataaattagtgttaactgttaagtagtcaa 14811661  T
Q  204 cattagataaagatgttc 221  Q
    ||||||| ||||||||||    
T  14811662 cattagacaaagatgttc 14811679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14314288 - 14314062
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagc-------tattctctct 93  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||       ||||||||||    
T  14314288 atcaagtctggctgcgctatcaaaatcatattgtctcttctaacctaaaaaaatagggtttctcgtcaccacatagcaatagccaatagttattctctct 14314189  T
Q  94 tctaaccattaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgtt 193  Q
    |||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  14314188 tctaaccattaccggtgattgaattctactttgtttctcttctctctaatgttatgtttctt-tgctgtttgttttcgatataaattagtgttaactgtt 14314090  T
Q  194 aagtagtcaacattagataaagatgttc 221  Q
    ||||||||||||||||| ||| ||||||    
T  14314089 aagtagtcaacattagacaaaaatgttc 14314062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 29081109 - 29081213
Alignment:
Q  11 gcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaaccattaccactg 110  Q
    ||||| |||| |||| ||||||||||||||||| |  | || ||| |||| |||||||||||  |||||||| ||||| ||||||||||||||||||| |    
T  29081109 gcagcgctatgaaaaacatattgtctcttctaatcccagaaaatagggttcctcgtcaccaccgagcaatagttattccctcttctaaccattaccaccg 29081208  T
Q  111 attga 115  Q
    |||||    
T  29081209 attga 29081213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 13043666 - 13043622
Alignment:
Q  114 gaattctactctgtttctcttctctctaatgttatgtttcttctg 158  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  13043666 gaattctactatgtttctcttctctctaatgttatgtttcttctg 13043622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 46397987 - 46397774
Alignment:
Q  1 atcaagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaacc 100  Q
    |||||||||| |||| ||||||||||||||  |||| |||||||||||||| ||| ||||||||||||||||||| ||| || |||||||||||| || |    
T  46397987 atcaagtctgacagcgctatcaaaatcata--gtcttttctaacctaaaaaaatagggtttctcgtcaccacatatcaacagttattctctcttccaatc 46397890  T
Q  101 attaccactgattgaattctactctgtttctcttctctctaatgttatgtttcttctgctgtttgttttcgatataaattagtgataactgttaagtagt 200  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| ||||||| |    
T  46397889 attaccaccgattgaattctact--gtttctcttctctctaatgttatgtttcttctgttgtttgttttcgatataaattattgttaactattaagtaat 46397792  T
Q  201 caacattagataaagatg 218  Q
    |||||||||| |||||||    
T  46397791 caacattagacaaagatg 46397774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 158
Target Start/End: Original strand, 33368964 - 33369114
Alignment:
Q  4 aagtctggcagcactatcaaaatcatattgtctcttctaacctaaaaatatatggtttctcgtcaccacatagcaatagctattctctcttctaaccatt 103  Q
    ||||| |||| | ||||||||| |||||| |||||||||||| ||||| ||  ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  33368964 aagtccggcaccgctatcaaaaacatattatctcttctaacccaaaaa-attgggtttctcgtcaccacatagcgatagctattccctcttctaaccatt 33369062  T
Q  104 accactgattgaattctactctgtttctcttctctctaatgttatgtttcttctg 158  Q
    |||||||||||||||||||||||||||   ||||||||||| |||||||||||||    
T  33369063 accactgattgaattctactctgtttc---tctctctaatgctatgtttcttctg 33369114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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