View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_55 (Length: 250)
Name: NF3687_low_55
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_55 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 5950277 - 5950038
Alignment:
| Q |
1 |
agtttgacaaaattacattgatactataattttgttgaatctcaaaactatactttttgttaaaattatagagtggagtcataattttgccaaattcata |
100 |
Q |
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| T |
5950277 |
agtttgacaaaattacagtgatgttataattttgttgaatctcaaaactataccttttgttaaaattatagagtggagtcataattttgccaaattcata |
5950178 |
T |
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| Q |
101 |
tttgatctagatatgaacaaagttaatcaatcaatttaactcaagtggttaatgagattcatcaaatgacgaatcgttcaggagaatcagattcgattcc |
200 |
Q |
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| T |
5950177 |
tttgatctagatatgaacaaagttaatcaatcaatttgactcaagtggttaatgagattcatcaaatgaagaatcgttcagaagaaccagattcgattcc |
5950078 |
T |
|
| Q |
201 |
tgattgaaacaattcttagctaagttatacataccctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
5950077 |
tgattgaaacaattcttagctaagttatacataccctatg |
5950038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 4299381 - 4299462
Alignment:
| Q |
140 |
ctcaagtggttaatgagattcatcaaatgacgaatcgttcaggagaatcaga-ttcgattcctgattgaaacaattcttagc |
220 |
Q |
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||||||||||||||||| |||| |||| ||||||||| || |||||| || ||||||||||| || ||||||||||||| |
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| T |
4299381 |
ctcaagtggttaatgagcttcaccaaaggacgaatcgctcgggagaacgcgagttcgattcctgggtgtaacaattcttagc |
4299462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 4738503 - 4738458
Alignment:
| Q |
141 |
tcaagtggttaatgagattcatcaaatgacgaatcgttcaggagaa |
186 |
Q |
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| T |
4738503 |
tcaagtgattaatgagatcaatcaaatgacgaattgttcaggagaa |
4738458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 14949698 - 14949653
Alignment:
| Q |
141 |
tcaagtggttaatgagattcatcaaatgacgaatcgttcaggagaa |
186 |
Q |
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|||||||||||||||| | |||||| ||||||||||||||||||| |
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| T |
14949698 |
tcaagtggttaatgagctctatcaaaagacgaatcgttcaggagaa |
14949653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 25296909 - 25296863
Alignment:
| Q |
140 |
ctcaagtggttaatgagattcatcaaatgacgaatcgttcaggagaa |
186 |
Q |
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||||||||||||||||| | || |||| ||||||||||||||||||| |
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| T |
25296909 |
ctcaagtggttaatgagctccaccaaaggacgaatcgttcaggagaa |
25296863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 45718464 - 45718427
Alignment:
| Q |
3 |
tttgacaaaattacattgatactataattttgttgaat |
40 |
Q |
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| T |
45718464 |
tttgacaaaattacactgataccataattttgttgaat |
45718427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25885785 - 25885823
Alignment:
| Q |
1 |
agtttgacaaaattacattgatactataattttgttgaa |
39 |
Q |
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| T |
25885785 |
agtttgacaaaattacaatgatactatgattttgttgaa |
25885823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 41079968 - 41079927
Alignment:
| Q |
139 |
actcaagtggttaatgagattcatcaaatgacgaatcgttca |
180 |
Q |
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| T |
41079968 |
actcaagtggttaatgagctccatcaaaagacgaatcgttca |
41079927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 2344245 - 2344294
Alignment:
| Q |
139 |
actcaagtggttaatgagattcatcaaatgacgaatcgttcaggagaatc |
188 |
Q |
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|||||||||||||||||| ||||||||||||| ||| || ||||||||| |
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| T |
2344245 |
actcaagtggttaatgagtttcatcaaatgacaaattttttaggagaatc |
2344294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 38919 - 38967
Alignment:
| Q |
140 |
ctcaagtggttaatgagattcatcaaatgacgaatcgttcaggagaatc |
188 |
Q |
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|||||||| ||||||| || ||||||||||||||||||| | ||||||| |
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| T |
38919 |
ctcaagtgattaatgaaatccatcaaatgacgaatcgtttaagagaatc |
38967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 34425804 - 34425764
Alignment:
| Q |
138 |
aactcaagtggttaatgagattcatcaaatgacgaatcgtt |
178 |
Q |
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|||||||||||||||| |||||||||| ||||| ||||||| |
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| T |
34425804 |
aactcaagtggttaataagattcatcatatgactaatcgtt |
34425764 |
T |
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