View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_59 (Length: 247)
Name: NF3687_low_59
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 34721685 - 34721469
Alignment:
| Q |
18 |
caatctgattcaacttgctgtcttttttggatgacgttgaatcaattgctctagaattgatcacttttcttaaaatactgaaggttccatgatctgtttg |
117 |
Q |
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| T |
34721685 |
caatctgattcaacttgctgtcttttttggacgacgttgaatcaattgctctagaattgatcacttttcttaaaatactgaaggttccatgatctgtttg |
34721586 |
T |
|
| Q |
118 |
agtttgatggaaagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcgccgtaatcattctcgtaaaactgcccaatcaagtcaatcagc |
217 |
Q |
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| T |
34721585 |
agtttgatggaaagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcgccgtaatcattctcgtaaaactgcccaatcaagtcaatcagc |
34721486 |
T |
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| Q |
218 |
tttgtcttcgtcaccct |
234 |
Q |
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||||||||||||||||| |
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| T |
34721485 |
tttgtcttcgtcaccct |
34721469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 34726813 - 34726606
Alignment:
| Q |
18 |
caatctgattcaacttgctgtcttttttggatgacgttgaatcaattgctctagaattgatcacttttcttaaaatactgaaggttccatgatctgtttg |
117 |
Q |
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| T |
34726813 |
caatctgattcaacttgctgtcttttttggatggtgttgaataaattgctctagaattgatcactttgcttaaaatgctgaaggttccatgatctgtttg |
34726714 |
T |
|
| Q |
118 |
agtttgatggaaagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcgccgtaatcattctcgtaaaactgcccaatcaagtcaatcagc |
217 |
Q |
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| T |
34726713 |
agtttgatggaaagaagaaaagctgcagacgacaactttcaaatcacaatgcaaggcgccgtaaatatcatcgtcaagctgtccaatcaagccaatcggc |
34726614 |
T |
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| Q |
218 |
tttgtctt |
225 |
Q |
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|||||||| |
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| T |
34726613 |
tttgtctt |
34726606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 38611434 - 38611298
Alignment:
| Q |
90 |
aaatactgaaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcgccgtaatcattctc |
189 |
Q |
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|||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||| ||| ||||||| |||||| |||| | |||||| || || |
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| T |
38611434 |
aaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatc |
38611335 |
T |
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| Q |
190 |
gtaaaactgcccaatcaagtcaatcagctttgtcttc |
226 |
Q |
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| T |
38611334 |
ctgaatctgtccaatcaagtcaatcagctttgtcttc |
38611298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 38495463 - 38495542
Alignment:
| Q |
96 |
tgaaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcg |
175 |
Q |
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||||||||||||||||| | |||||||||| || || | |||||||||||| ||||||||| | |||||||||||||| |
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| T |
38495463 |
tgaaggttccatgatctctcagagtttgatgataaaaaaagaagctgcagacgccgtctttcagatcacaatgcaaggcg |
38495542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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