View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3687_low_6 (Length: 469)

Name: NF3687_low_6
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3687_low_6
NF3687_low_6
[»] chr8 (7 HSPs)
chr8 (198-350)||(45475394-45475546)
chr8 (200-350)||(13535067-13535217)
chr8 (200-350)||(13624607-13624757)
chr8 (38-121)||(13534904-13534986)
chr8 (38-121)||(13624444-13624526)
chr8 (44-92)||(41879009-41879057)
chr8 (200-240)||(41878848-41878888)
[»] chr1 (8 HSPs)
chr1 (198-350)||(23185009-23185161)
chr1 (200-350)||(4971993-4972143)
chr1 (200-348)||(4978561-4978709)
chr1 (10-121)||(23185252-23185359)
chr1 (261-350)||(1801131-1801220)
chr1 (38-95)||(4971835-4971892)
chr1 (38-95)||(5027404-5027461)
chr1 (261-330)||(24988138-24988207)
[»] chr6 (2 HSPs)
chr6 (200-350)||(19738085-19738235)
chr6 (43-123)||(19737915-19737994)
[»] chr4 (17 HSPs)
chr4 (200-350)||(10428546-10428696)
chr4 (191-350)||(35464681-35464842)
chr4 (200-326)||(35779722-35779848)
chr4 (39-123)||(23510016-23510100)
chr4 (44-123)||(47128790-47128868)
chr4 (42-121)||(35464914-35464993)
chr4 (38-123)||(10978703-10978790)
chr4 (38-123)||(48209046-48209130)
chr4 (38-95)||(35779542-35779604)
chr4 (38-115)||(9578853-9578929)
chr4 (38-115)||(9584548-9584624)
chr4 (200-244)||(9579016-9579060)
chr4 (200-244)||(9584711-9584755)
chr4 (200-244)||(48208923-48208967)
chr4 (39-77)||(10428423-10428461)
chr4 (200-238)||(47128661-47128699)
chr4 (200-244)||(10978580-10978624)
[»] chr5 (6 HSPs)
chr5 (200-303)||(30853937-30854040)
chr5 (38-123)||(22986762-22986846)
chr5 (10-122)||(16592253-16592372)
chr5 (261-350)||(9720431-9720520)
chr5 (261-350)||(15930504-15930593)
chr5 (38-93)||(30854159-30854215)
[»] chr3 (3 HSPs)
chr3 (232-350)||(54575250-54575369)
chr3 (38-121)||(18372288-18372370)
chr3 (261-350)||(17334092-17334181)
[»] scaffold0070 (1 HSPs)
scaffold0070 (38-123)||(1144-1228)
[»] chr7 (1 HSPs)
chr7 (261-350)||(47259637-47259726)
[»] chr2 (1 HSPs)
chr2 (375-448)||(38691434-38691508)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 198 - 350
Target Start/End: Complemental strand, 45475546 - 45475394
Alignment:
Q  198 gtgaatacctttaaaacaagtcttcattcacaccaaaacgagacttcctacgcgcatttactaaagcaaattcatcaatcaactcttcgtattgtatatt 297  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45475546 gtgaataccttcaaaacgagtcttcattcacaccaaaacgagacttcctacgcgcatttactgaagcaaattcatcaatcaactcttcgtattgtatatt 45475447  T
Q  298 tcgcaaaataggattctcaattgctatcattgctaagccattaagtctttctt 350  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45475446 tcgcaacataggattctcaattgctatcattgctaagccattaagtctttctt 45475394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 200 - 350
Target Start/End: Original strand, 13535067 - 13535217
Alignment:
Q  200 gaatacctttaaaacaagtcttcattcacaccaaaacgagacttcctacgcgcatttactaaagcaaattcatcaatcaactcttcgtattgtatatttc 299  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  13535067 gaataccttcaaaacgagtcttcattcacaccaaaacgagacttcctacgcgcatttactgaagcaaattcatcaaccaactcttcgtattgtatatttc 13535166  T
Q  300 gcaaaataggattctcaattgctatcattgctaagccattaagtctttctt 350  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  13535167 gcaacatatgattctcaattgctatcattgctaagccattaagtctttctt 13535217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 200 - 350
Target Start/End: Original strand, 13624607 - 13624757
Alignment:
Q  200 gaatacctttaaaacaagtcttcattcacaccaaaacgagacttcctacgcgcatttactaaagcaaattcatcaatcaactcttcgtattgtatatttc 299  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  13624607 gaataccttcaaaacgagtcttcattcacaccaaaacgagacttcctacgcgcatttactgaagcaaattcatcaaccaactcttcgtattgtatatttc 13624706  T
Q  300 gcaaaataggattctcaattgctatcattgctaagccattaagtctttctt 350  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  13624707 gcaacatatgattctcaattgctatcattgctaagccattaagtctttctt 13624757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 13534904 - 13534986
Alignment:
Q  38 ggcagcacaacaaccaagcagtcacaacaacagcaaaaaacccacaaagctggcagcagaggaagccaatcagtcacatcaaca 121  Q
    ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| | | |||||||| |||||||| |||||    
T  13534904 ggcagcacaacaaccaagcggtcacaacaacaacaaaaaatccacaaagctggcagtaca-gaagccaagcagtcacagcaaca 13534986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 13624444 - 13624526
Alignment:
Q  38 ggcagcacaacaaccaagcagtcacaacaacagcaaaaaacccacaaagctggcagcagaggaagccaatcagtcacatcaaca 121  Q
    ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| | | |||||||| |||||||| |||||    
T  13624444 ggcagcacaacaaccaagcggtcacaacaacaacaaaaaatccacaaagctggcagtaca-gaagccaagcagtcacagcaaca 13624526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 41879057 - 41879009
Alignment:
Q  44 acaacaaccaagcagtcacaacaacagcaaaaaacccacaaagctggca 92  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  41879057 acaacaaccaagcggtcacaacaacaacaaaaaacccacaaagctggca 41879009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 41878888 - 41878848
Alignment:
Q  200 gaatacctttaaaacaagtcttcattcacaccaaaacgaga 240  Q
    ||||||||| ||||| |||||||||||||||||||||||||    
T  41878888 gaataccttcaaaacgagtcttcattcacaccaaaacgaga 41878848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 198 - 350
Target Start/End: Complemental strand, 23185161 - 23185009
Alignment:
Q  198 gtgaatacctttaaaacaagtcttcattcacaccaaaacgagacttcctacgcgcatttactaaagcaaattcatcaatcaactcttcgtattgtatatt 297  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23185161 gtgaataccttcaaaacgagtcttcattcacaccaaaacgagacttcctacgcgcatttactgaagcaaattcatcaatcaactcttcgtattgtatatt 23185062  T
Q  298 tcgcaaaataggattctcaattgctatcattgctaagccattaagtctttctt 350  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23185061 tcgcaacataggattctcaattgctatcattgctaagccattaagtctttctt 23185009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 200 - 350
Target Start/End: Original strand, 4971993 - 4972143
Alignment:
Q  200 gaatacctttaaaacaagtcttcattcacaccaaaacgagacttcctacgcgcatttactaaagcaaattcatcaatcaactcttcgtattgtatatttc 299  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4971993 gaataccttcaaaacgagtcttcattcacaccaaaacgagacttcctaagggcatttactgaagcaaattcatcaatcaactcttcgtattgtatatttc 4972092  T
Q  300 gcaaaataggattctcaattgctatcattgctaagccattaagtctttctt 350  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4972093 gcaacataggattctcaattgctatcattgctaagccattaagtctttctt 4972143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 200 - 348
Target Start/End: Complemental strand, 4978709 - 4978561
Alignment:
Q  200 gaatacctttaaaacaagtcttcattcacaccaaaacgagacttcctacgcgcatttactaaagcaaattcatcaatcaactcttcgtattgtatatttc 299  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4978709 gaataccttcaaaacgagtcttcattcacatcaaaacgagacttcctacgtgcatttactgaagcaaattcatcaatcaactcttcgtattgtatatttc 4978610  T
Q  300 gcaaaataggattctcaattgctatcattgctaagccattaagtctttc 348  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  4978609 gcaacataggattctcaattgctatcattgctaagccattaaatctttc 4978561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 23185359 - 23185252
Alignment:
Q  10 gcacagaaccaccaaaagccatgcacgcggcagcacaacaaccaagcagtcacaacaacagcaaaaaacccacaaagctggcagcagaggaagccaatca 109  Q
    ||||| |||||||||||||||||| |||   ||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| | |||||||| ||    
T  23185359 gcacaaaaccaccaaaagccatgcgcgc---agcacaacaaccaagcagtcacaacaacaactaaaaacccaaaaagctggcagcaca-gaagccaagca 23185264  T
Q  110 gtcacatcaaca 121  Q
     ||||| |||||    
T  23185263 atcacagcaaca 23185252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 261 - 350
Target Start/End: Original strand, 1801131 - 1801220
Alignment:
Q  261 aagcaaattcatcaatcaactcttcgtattgtatatttcgcaaaataggattctcaattgctatcattgctaagccattaagtctttctt 350  Q
    ||||||||||||||| ||| ||||| |||||||| ||   |||||||  ||||||||||||||||| |||||| ||||||||||||||||    
T  1801131 aagcaaattcatcaaccaagtcttcatattgtattttctccaaaatatcattctcaattgctatcaatgctaatccattaagtctttctt 1801220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 4971835 - 4971892
Alignment:
Q  38 ggcagcacaacaaccaagcagtcacaacaacagcaaaaaacccacaaagctggcagca 95  Q
    |||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||    
T  4971835 ggcagcacaacaaccaagcagtcacagcaacaacaaaaaatccacaaagctggcagca 4971892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 5027461 - 5027404
Alignment:
Q  38 ggcagcacaacaaccaagcagtcacaacaacagcaaaaaacccacaaagctggcagca 95  Q
    |||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  5027461 ggcaacacaacaaccaagcagtcacaacaacaacgaaaaacccacaaagctggcagca 5027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 261 - 330
Target Start/End: Complemental strand, 24988207 - 24988138
Alignment:
Q  261 aagcaaattcatcaatcaactcttcgtattgtatatttcgcaaaataggattctcaattgctatcattgc 330  Q
    ||||||||| ||||||||||||||| ||||||||||||  ||| |||| |||||||||||||||||||||    
T  24988207 aagcaaattgatcaatcaactcttcatattgtatattttccaacatagcattctcaattgctatcattgc 24988138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 200 - 350
Target Start/End: Original strand, 19738085 - 19738235
Alignment:
Q  200 gaatacctttaaaacaagtcttcattcacaccaaaacgagacttcctacgcgcatttactaaagcaaattcatcaatcaactcttcgtattgtatatttc 299  Q
    ||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  19738085 gaataccttcaaaacgaatcttcattcacacctaaacgagacttcctacgcgcatttactgaagcaaattcatcaatcaactcttcgtattgtatatttt 19738184  T
Q  300 gcaaaataggattctcaattgctatcattgctaagccattaagtctttctt 350  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19738185 gcaacataggattctcaattgctatcattgctaagccattaagtctttctt 19738235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 19737915 - 19737994
Alignment:
Q  43 cacaacaaccaagcagtcacaacaacagcaaaaaacccacaaagctggcagcagaggaagccaatcagtcacatcaacagc 123  Q
    |||||||||||||  |||||||||||| ||||||||||||||||||||||| | | |||||||| ||||||||||||||||    
T  19737915 cacaacaaccaagtggtcacaacaacaacaaaaaacccacaaagctggcagtaca-gaagccaagcagtcacatcaacagc 19737994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 200 - 350
Target Start/End: Original strand, 10428546 - 10428696
Alignment:
Q  200 gaatacctttaaaacaagtcttcattcacaccaaaacgagacttcctacgcgcatttactaaagcaaattcatcaatcaactcttcgtattgtatatttc 299  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  10428546 gaataccttcaaaacgagtcttcattcacaccaaaacgagacttcctatgtgcatttactgaagcaaattcatcaatcaactcttcttattgtatatttc 10428645  T
Q  300 gcaaaataggattctcaattgctatcattgctaagccattaagtctttctt 350  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10428646 gcaacataggattctcaattgctatcattgctaagccattaagtctttctt 10428696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 191 - 350
Target Start/End: Complemental strand, 35464842 - 35464681
Alignment:
Q  191 agttcaagtgaatacctttaaaacaagtcttcattcacaccaaaacgagacttcctacgcgcatttactaaagcaaattcatcaatcaa--ctcttcgta 288  Q
    |||||| | ||||| ||| ||||  ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||| ||||    
T  35464842 agttcaggcgaatatcttcaaaatgagtcttcatgcacaccaaaacgagacttcctacgcgcatttactgaagcaaattcatcaatcaaaactctccgta 35464743  T
Q  289 ttgtatatttcgcaaaataggattctcaattgctatcattgctaagccattaagtctttctt 350  Q
    ||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||    
T  35464742 ttgtatatttcgcaacataggattctcatttactatcattgctaagccattaagtctttctt 35464681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 200 - 326
Target Start/End: Original strand, 35779722 - 35779848
Alignment:
Q  200 gaatacctttaaaacaagtcttcattcacaccaaaacgagacttcctacgcgcatttactaaagcaaattcatcaatcaactcttcgtattgtatatttc 299  Q
    ||||||||| ||||| |||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  35779722 gaataccttcaaaacgagtcttgattcacaccaaaacgagacttcctacgcacatttactgaagcaaattcatcaatcaactcttcgtattgtatatttc 35779821  T
Q  300 gcaaaataggattctcaattgctatca 326  Q
    |||| ||||||||||||||||||||||    
T  35779822 gcaacataggattctcaattgctatca 35779848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 23510016 - 23510100
Alignment:
Q  39 gcagcacaacaaccaagcagtcacaacaacagc-aaaaaacccacaaagctggcagcagaggaagccaatcagtcacatcaacagc 123  Q
    |||||||||||||||||| |||||||||||| | |||||||||||||||||||||| | | |||||||| ||||||||||||||||    
T  23510016 gcagcacaacaaccaagcggtcacaacaacaacaaaaaaacccacaaagctggcagtaca-gaagccaagcagtcacatcaacagc 23510100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 47128868 - 47128790
Alignment:
Q  44 acaacaaccaagcagtcacaacaacagcaaaaaacccacaaagctggcagcagaggaagccaatcagtcacatcaacagc 123  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||| | | |||||||| |||||||| |||||||    
T  47128868 acaacaaccaagcggtcacaacaacaacaaaaaacccacaaagctggcagta-aagaagccaagcagtcacagcaacagc 47128790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 35464993 - 35464914
Alignment:
Q  42 gcacaacaaccaagcagtcacaacaacagcaa-aaaacccacaaagctggcagcagaggaagccaatcagtcacatcaaca 121  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | |||||||| | |||||| |||||    
T  35464993 gcacaacaaccaagcagtcacaacaacagcaaaaaaacccacaaagttggcagcaca-gaagccaagccgtcacaacaaca 35464914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 10978790 - 10978703
Alignment:
Q  38 ggcagcacaacaaccaagcagtcacaac---aacagcaaaaaacccacaaagctggcagcagaggaagccaatcagtcacatcaacagc 123  Q
    ||||||||||||||||||||||||||||   |||| |||||||||||||||||| |||| | | |||||||| |||||||| |||||||    
T  10978790 ggcagcacaacaaccaagcagtcacaacaacaacaacaaaaaacccacaaagctagcagtaca-gaagccaaacagtcacaacaacagc 10978703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 48209130 - 48209046
Alignment:
Q  38 ggcagcacaacaaccaagcagtcacaacaacagcaaaaaacccacaaagctggcagcagaggaagccaatcagtcacatcaacagc 123  Q
    ||||||||||||||||||  |||||||||||  |||||||||||||||||||| || | | |||||||| |||||||| |||||||    
T  48209130 ggcagcacaacaaccaagtggtcacaacaactacaaaaaacccacaaagctggaagtaca-gaagccaagcagtcacagcaacagc 48209046  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 35779542 - 35779604
Alignment:
Q  38 ggcagcacaacaaccaagcagtcacaacaacagc-----aaaaaacccacaaagctggcagca 95  Q
    |||||||||||||||||||||||||||||||| |     ||||||||||||||||||||||||    
T  35779542 ggcagcacaacaaccaagcagtcacaacaacaacaaaaaaaaaaacccacaaagctggcagca 35779604  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 9578853 - 9578929
Alignment:
Q  38 ggcagcacaacaaccaagcagtcacaacaacagcaaaaaacccacaaagctggcagcagaggaagccaatcagtcaca 115  Q
    ||||||||||||||||||  |||||||||||  |||||||||||||||||||| || | | |||||||| ||||||||    
T  9578853 ggcagcacaacaaccaagtggtcacaacaactacaaaaaacccacaaagctggaagtaca-gaagccaagcagtcaca 9578929  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 9584548 - 9584624
Alignment:
Q  38 ggcagcacaacaaccaagcagtcacaacaacagcaaaaaacccacaaagctggcagcagaggaagccaatcagtcaca 115  Q
    ||||||||||||||||||  |||||||||||  |||||||||||||||||||| || | | |||||||| ||||||||    
T  9584548 ggcagcacaacaaccaagtggtcacaacaactacaaaaaacccacaaagctggaagtaca-gaagccaagcagtcaca 9584624  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 9579016 - 9579060
Alignment:
Q  200 gaatacctttaaaacaagtcttcattcacaccaaaacgagacttc 244  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||||    
T  9579016 gaataccttcaaaacgagtcttcattcacaccaaaacgagccttc 9579060  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 9584711 - 9584755
Alignment:
Q  200 gaatacctttaaaacaagtcttcattcacaccaaaacgagacttc 244  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||||    
T  9584711 gaataccttcaaaacgagtcttcattcacaccaaaacgagccttc 9584755  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 48208967 - 48208923
Alignment:
Q  200 gaatacctttaaaacaagtcttcattcacaccaaaacgagacttc 244  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||||    
T  48208967 gaataccttcaaaacgagtcttcattcacaccaaaacgagccttc 48208923  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 10428423 - 10428461
Alignment:
Q  39 gcagcacaacaaccaagcagtcacaacaacagcaaaaaa 77  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  10428423 gcagcacaacaaccaagcggtcacaacaacaacaaaaaa 10428461  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 47128699 - 47128661
Alignment:
Q  200 gaatacctttaaaacaagtcttcattcacaccaaaacga 238  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  47128699 gaataccttcaaaacgagtcttcattcacaccaaaacga 47128661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 10978624 - 10978580
Alignment:
Q  200 gaatacctttaaaacaagtcttcattcacaccaaaacgagacttc 244  Q
    ||||||||| ||||| |||||||||||||||||||| ||| ||||    
T  10978624 gaataccttcaaaacgagtcttcattcacaccaaaatgagccttc 10978580  T

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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 200 - 303
Target Start/End: Complemental strand, 30854040 - 30853937
Alignment:
Q  200 gaatacctttaaaacaagtcttcattcacaccaaaacgagacttcctacgcgcatttactaaagcaaattcatcaatcaactcttcgtattgtatatttc 299  Q
    ||||||||| ||||| |||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||  |||||||||||||    
T  30854040 gaataccttcaaaacgagtcttcattcacaccgaaacgagacttcctacgtgcatttactgaagcaaattcatcaatcaactttttctattgtatatttc 30853941  T
Q  300 gcaa 303  Q
    ||||    
T  30853940 gcaa 30853937  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 22986762 - 22986846
Alignment:
Q  38 ggcagcacaacaaccaagcagtcacaacaacagcaaaaaacccacaaagctggcagcagaggaagccaatcagtcacatcaacagc 123  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | | ||||||||||||||||| |||||||    
T  22986762 ggcagcacaacaaccaagcggtcacaacaacaacaaaaaacccacaaagctggcagtaca-gaagccaatcagtcacagcaacagc 22986846  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 16592253 - 16592372
Alignment:
Q  10 gcacagaaccaccaaaagccatgcacgc--------ggcagcacaacaaccaagcagtcacaacaacagcaaaaaacccacaaagctggcagcagaggaa 101  Q
    ||||| ||||||||||||||||||||||        ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | |  ||    
T  16592253 gcacaaaaccaccaaaagccatgcacgcacaaaactggcagcacaacaaccaagcggtcacaacaacaacaaaaaacccacaaagctggcagtaca-taa 16592351  T
Q  102 gccaatcagtcacatcaacag 122  Q
    ||||| |||||||||||||||    
T  16592352 gccaaacagtcacatcaacag 16592372  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 261 - 350
Target Start/End: Complemental strand, 9720520 - 9720431
Alignment:
Q  261 aagcaaattcatcaatcaactcttcgtattgtatatttcgcaaaataggattctcaattgctatcattgctaagccattaagtctttctt 350  Q
    ||||||||||||||| ||| ||||| |||||||| ||   |||||||  ||||||||||||||||| |||||| ||||||||||||||||    
T  9720520 aagcaaattcatcaaccaagtcttcatattgtattttctccaaaatatcattctcaattgctatcaatgctaatccattaagtctttctt 9720431  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 261 - 350
Target Start/End: Complemental strand, 15930593 - 15930504
Alignment:
Q  261 aagcaaattcatcaatcaactcttcgtattgtatatttcgcaaaataggattctcaattgctatcattgctaagccattaagtctttctt 350  Q
    ||||||||||||||| ||| ||||| |||||||| ||   |||||||  ||||||||||||||||| |||||| ||||||||||||||||    
T  15930593 aagcaaattcatcaaccaagtcttcatattgtattttctccaaaatatcattctcaattgctatcaatgctaatccattaagtctttctt 15930504  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 30854215 - 30854159
Alignment:
Q  38 ggcagcacaacaaccaagcagtcacaacaacagc-aaaaaacccacaaagctggcag 93  Q
    ||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||    
T  30854215 ggcagcacaacaaccaagcggtcacaacaacaacaaaaaaatccacaaagctggcag 30854159  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 232 - 350
Target Start/End: Original strand, 54575250 - 54575369
Alignment:
Q  232 aaaacgagacttcctacgcgcatttactaaagcaaattcatcaatcaactcttcgtattgtatatttcgcaaaataggattctcaattgctatcattgct 331  Q
    |||||||  |||||||| |||||||||| | ||||||| |||||||||||||||||||||||||||| |||| |||  | ||||||||||||||||||||    
T  54575250 aaaacgaatcttcctactcgcatttactgacgcaaattgatcaatcaactcttcgtattgtatattttgcaacataacactctcaattgctatcattgct 54575349  T
Q  332 aagccatt-aagtctttctt 350  Q
    |||||||| |||||||||||    
T  54575350 aagccattaaagtctttctt 54575369  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 18372370 - 18372288
Alignment:
Q  38 ggcagcacaacaaccaagcagtcacaacaacagcaaaaaacccacaaagctggcagcagaggaagccaatcagtcacatcaaca 121  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| | | |||||||| |||||||| |||||    
T  18372370 ggcagcacaacaaccaagcggtcacaacaacaacaaaacacccacaaagctggcagtata-gaagccaagcagtcacaacaaca 18372288  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 261 - 350
Target Start/End: Original strand, 17334092 - 17334181
Alignment:
Q  261 aagcaaattcatcaatcaactcttcgtattgtatatttcgcaaaataggattctcaattgctatcattgctaagccattaagtctttctt 350  Q
    ||||||||||||||| ||| ||||| |||||||| ||   |||||||  ||||||||||||||||| |||||| ||||||||||||||||    
T  17334092 aagcaaattcatcaaccaagtcttcatattgtattttctccaaaatatcattctcaattgctatcaatgctaatccattaagtctttctt 17334181  T

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Target: scaffold0070 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 1228 - 1144
Alignment:
Q  38 ggcagcacaacaaccaagcagtcacaacaacagcaaaaaacccacaaagctggcagcagaggaagccaatcagtcacatcaacagc 123  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| | | |||||||| |||||||| |||||||    
T  1228 ggcagcacaacaaccaagcggtcacaacaacaacaaaaaacccacaaagttggcagtaca-gaagccaagcagtcacagcaacagc 1144  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 261 - 350
Target Start/End: Original strand, 47259637 - 47259726
Alignment:
Q  261 aagcaaattcatcaatcaactcttcgtattgtatatttcgcaaaataggattctcaattgctatcattgctaagccattaagtctttctt 350  Q
    ||||||||||||||| ||| ||||| |||||||| ||   |||||||  ||||||||||||||||| |||||| ||||||||||||||||    
T  47259637 aagcaaattcatcaaccaagtcttcatattgtattttctccaaaatatcattctcaattgctatcaatgctaatccattaagtctttctt 47259726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 38691508 - 38691434
Alignment:
Q  375 tacaatttttacattataatgatccttcatcttt-acttaactggtttaggggttaaagagaaagcaagccatat 448  Q
    ||||||||| |||||| | ||| ||||||| ||  ||||||| ||||||||||||||||| |||||||| |||||    
T  38691508 tacaattttaacattaaattgacccttcatgttacacttaacaggtttaggggttaaagacaaagcaagtcatat 38691434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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