View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3687_low_61 (Length: 246)
Name: NF3687_low_61
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_61 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 155597 - 155823
Alignment:
| Q |
21 |
ggactcaggcatttgctagttgtgcctaagaaaccaggagtaagtaaa-tactcttacttttatttatttgtgttgttgttaattagagttgaatgatga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
155597 |
ggactcaggcatttgctagttgtgcctaagaaaccaggagtaagtaaaatactcttacttttatttatttgtgttgttgttaattagagttgaatgatga |
155696 |
T |
|
| Q |
120 |
attacctttattattataactaatatttgtaaatgttaaacattgtgcagaggcctccaattgttgggatactgacaaggcatgatttcatgcacgacta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
155697 |
attacctttattattataactaatatttgtaaatgttaaacaatgtgcagaggcctccaattgttgggatactgacaaggcatgatttcatgcacgacta |
155796 |
T |
|
| Q |
220 |
tatcttgggcctgttcccaaacttgaa |
246 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
155797 |
tatcttgggcctattcccaaacttgaa |
155823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University