View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_63 (Length: 245)
Name: NF3687_low_63
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11741420 - 11741194
Alignment:
| Q |
1 |
ttgtgctgcatttgtaaggagattattaaaccttgggtgaagaacttggcggtgcgcgctttgaattgaataaactgtgctatttggatttcaagagtga |
100 |
Q |
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| T |
11741420 |
ttgtgctgcattggtaaggagattattaaaccttgggtgaagaacttggcggtgcgcgctttgaactgaataaactgtgctatttgaatttcaagagtga |
11741321 |
T |
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| Q |
101 |
aaggcgagccaccatcgaagaaggtcttgttttgtcgcataatcgttgatgacccagcagcaaagtttgcaccatgcctatagcttgttccaattgaatt |
200 |
Q |
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| T |
11741320 |
aaggcgagccaccatcgaagaaggtcttgttttgcctcataattgttgatgacccagcagcaaagtttgcaccatgcctatagcttgttccaattgagtt |
11741221 |
T |
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| Q |
201 |
tatatatgcgctcaaaaatggcaatct |
227 |
Q |
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| T |
11741220 |
tatatatgcgctcaaaaatggcaatct |
11741194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 11737149 - 11736952
Alignment:
| Q |
26 |
ttaaaccttgggtgaagaacttggcggtgcgcgctttgaattgaataaactgtgctatttggatttcaagagtgaaaggcgagccaccatcgaagaaggt |
125 |
Q |
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|||||||||| ||||||||||| ||||||| | |||||| || |||||||| ||| |||||||||||| |||||||||| ||||||||| ||| | || |
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| T |
11737149 |
ttaaaccttgtgtgaagaacttcccggtgcgtgatttgaactggttaaactgttctacttggatttcaagggtgaaaggcgtgccaccatcaaagtacgt |
11737050 |
T |
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| Q |
126 |
cttgttttgtcgcataatcgttgatgacccagcagcaaagtttgcaccatgcctatagcttgttccaattgaatttatatatgcgctcaaaaatggca |
223 |
Q |
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| T |
11737049 |
cttgttttgtcgcataatcgttgatgatcctgcagcaaagtttgcaccatgcctatagcttgttccaattgagtttatatatgcgctcaaaaatggca |
11736952 |
T |
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